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planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
author pimarin
date Mon, 15 May 2023 14:20:18 +0000
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[{"analysis_software_version": "1.7.0", "reference_database_version": "4.0", "summary_result_path": "test/data/dummy/bakta/bakta_summary.txt", "analysis_software_name": "bakta", "results": {"bakta": {"name": "bakta", "file_path": "test/data/dummy/bakta/bakta.json", "hid": "", "content": {"genome": {"genus": null, "species": null, "strain": null, "complete": false, "gram": "?", "translation_table": 11}, "stats": {"no_sequences": 100, "size": 3027634, "gc": 0.37312403018330487, "n_ratio": 0.0, "n50": 99915, "coding_ratio": 0.8765336232847167}, "features": [{"type": "cds", "contig": "contig_1", "start": 289, "stop": 1581, "strand": "+", "gene": "murA1", "product": "UDP-N-acetylglucosamine 1-carboxyvinyltransferase", "start_type": "ATG", "rbs_motif": "GGA/GAG/AGG", "db_xrefs": ["COG:COG0766", "COG:M", "EC:2.5.1.7", "GO:0005737", "GO:0007049", "GO:0008360", "GO:0008760", "GO:0009252", "GO:0019277", "GO:0051301", "GO:0071555", "KEGG:K00790", "RefSeq:WP_002357969.1", "SO:0001217", "UniParc:UPI000005C0AD", "UniRef:UniRef100_Q836E5", "UniRef:UniRef50_A0A0H2ZNL3", "UniRef:UniRef90_Q836E5"], "frame": 1, "aa_hexdigest": "4021070b34435358f292c1abc99c028c", "ups": {"uniparc_id": "UPI000005C0AD", "ncbi_nrp_id": "WP_002357969.1", "uniref100_id": "UniRef100_Q836E5", "db_xrefs": ["SO:0001217", "UniParc:UPI000005C0AD", "RefSeq:WP_002357969.1", "UniRef:UniRef100_Q836E5"]}, "ips": {"uniref100_id": "UniRef100_Q836E5", "uniref90_id": "UniRef90_Q836E5"}, "psc": {"uniref90_id": "UniRef90_Q836E5", "gene": "murA1", "product": "UDP-N-acetylglucosamine 1-carboxyvinyltransferase", "ec_ids": ["2.5.1.7"], "uniref50_id": "UniRef50_A0A0H2ZNL3", "cog_id": "COG0766", "cog_category": "M", "kegg_orthology_id": "K00790", "go_ids": ["GO:0005737", "GO:0008760", "GO:0007049", "GO:0051301", "GO:0071555", "GO:0009252", "GO:0008360", "GO:0019277"]}, "pscc": {"uniref50_id": "UniRef50_A0A0H2ZNL3", "db_xrefs": ["SO:0001217", "UniRef:UniRef50_A0A0H2ZNL3"], "product": "UDP-N-acetylglucosamine 1-carboxyvinyltransferase"}, "id": "IDOBJLBBGI_148", "locus": "IDOBJL_00005"}, {"type": "cds", "contig": "contig_1", "start": 1578, "stop": 2870, "strand": "+", "gene": "rho", "product": "transcription termination factor Rho", "start_type": "ATG", "rbs_motif": "GGAG/GAGG", "db_xrefs": ["COG:COG1158", "COG:K", "RefSeq:WP_002357968.1", "SO:0001217", "UniParc:UPI000005C0AE", "UniRef:UniRef100_A0A640MK61", "UniRef:UniRef50_Q03222", "UniRef:UniRef90_A0A6L6H4M2"], "frame": 3, "aa_hexdigest": "a1eaa40f20880852ca8b765a2ba8079d", "ups": {"uniparc_id": "UPI000005C0AE", "ncbi_nrp_id": "WP_002357968.1", "uniref100_id": "UniRef100_A0A640MK61", "db_xrefs": ["SO:0001217", "UniParc:UPI000005C0AE", "RefSeq:WP_002357968.1", "UniRef:UniRef100_A0A640MK61"]}, "ips": {"uniref100_id": "UniRef100_A0A640MK61", "uniref90_id": "UniRef90_A0A6L6H4M2"}, "psc": {"uniref90_id": "UniRef90_A0A6L6H4M2", "gene": "rho", "product": "transcription termination factor Rho", "uniref50_id": "UniRef50_Q03222", "cog_id": "COG1158", "cog_category": "K"}, "pscc": {"uniref50_id": "UniRef50_Q03222", "db_xrefs": ["SO:0001217", "UniRef:UniRef50_Q03222"], "product": "Transcription termination factor Rho"}, "id": "IDOBJLBBGI_149", "locus": "IDOBJL_00010"}], "run": {"start": "2023-02-13 14:26:12", "end": "2023-02-13 15:07:07"}, "summary": {"tRNAs": " 59", "tmRNAs": " 1", "rRNAs": " 6", "ncRNAs": " 36", "ncRNA regions": " 44", "CRISPR arrays": " 1", "CDSs": " 2887", "pseudogenes": " 8", "hypotheticals": " 302", "signal peptides": " 0", "sORFs": " 4", "gaps": " 0", "oriCs": " 4", "oriVs": " 0", "oriTs": " 0"}}}, "gff_file_path": {"name": "gff3", "file_path": "test/data/dummy/bakta/bakta_annotation.gff3", "hid": "", "content": {}}, "nucleotide_annotation_path": {"name": "nucleotide", "file_path": "test/data/dummy/bakta/bakta_nucleotide.fasta", "hid": "", "content": {}}, "amino_acid_annotation_path": {"name": "amino_acide", "file_path": "test/data/dummy/bakta/bakta_aminoacid.faa", "hid": "", "content": {}}}}]