Mercurial > repos > pimarin > abromicsextractor

annotate test-data/plasmidfinder/genome_hit.fasta @ 0:a157d29ef11d draft default tip

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planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
author pimarin
date Mon, 15 May 2023 14:20:18 +0000
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a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
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1 >repUS12:WARNING ID:100.0% COV:88.01% Best_match:contig00051 len=2083 cov=17.5 corr=0 origname=NODE_51_length_2083_cov_17.526074_pilon sw=shovill-spades/1.1.0 date=20230213:127..897:repUS12_2_repB(SAP014A)_GQ900379:88.013699
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
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2 ATGTGTCCTAATAGTAGCATTTATTCAGATGAAAAATCAAGGGTTTTAGTGGACAAGACA
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
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3 AAAAGTGGAAAAGTGAGACCATGGAGAGAAAAGAAAATCGCTAATGTTGATTACTTTGAA
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
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4 CTTCTGCATATTCTTGAATTTAAAAAGGCTGAAAGAGTAAAAGATTGTGCTGAAATATTA
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5 GAGTATAAACAAAATCGTGAAACAGGCGAAAGAAAGTTGTATCGAGTGTGGTTTTGTAAA
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6 TCCAGGCTTTGTCCAATGTGCAACTGGAGGAGAGCAATGAAACATGGCATTCAGTCACAA
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7 AAGGTTGTTGCTGAAGTTATTAAACAAAAGCCAACAGTTCGTTGGTTGTTTCTCACATTA
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8 ACAGTTAAAAATGTTTATGATGGCGAAGAATTAAATAAGAGTTTGTCAGATATGGCTCAA
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9 GGATTTCGCCGAATGATGCAATATAAAAAAATTAATAAAAATCTTGTTGGTTTTATGCGT
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10 GCAACGGAAGTGACAATAAATAATAAAGATAATTCTTATAATCAGCACATGCATGTATTG
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11 GTATGTGTGGAACCAACTTATTTTAAGAATACAGAAAACTACGTGAATCAAAAACAATGG
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12 ATTCAATTTTGGAAAAAGGCAATGAAATTAGACTATGATCCAAATGTAAAAGTTCAAATG
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13 ATTCGACCGAAAAATAAATATAAATCGGATATACAATCGGCAATTGACGAAACTGCAAAA
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14 TATCCTGTAAAGGATACGGATTTTATGACCGATGATGAAGAAAAGAATTTGGGTTCTGTT
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15 GCAAAGTTTTAAATAAAGAATAAAATCCCTTACGGTATCTATGATTTAAGCTGGGATTCC
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16 CAATAATACCTTGATTTCAGTACAGACCGAAAACCC
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17 >repUS40:WARNING ID:100.0% COV:100.0% Best_match:contig00026 len=35051 cov=66.2 corr=0 origname=NODE_26_length_35051_cov_66.162954_pilon sw=shovill-spades/1.1.0 date=20230213:21156..22313:repUS40_1_repB(pE394)_KP399637:100.000000
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18 ATGCTCAATTCTAGTATATCACGAAAGGTACTTATGATGAATGACATTCAAAACAAAAAA
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19 ATAGTTCAAGACAATGATTTAATTGTAAGTGTCGCAAAAATGGATAAGACACCCATGAAA
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20 TTTTTTGAATTAGCAGTCGCCAGTTTAGATATTAAGAATATTCCTGCTGATCGAACTGTT
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21 CATGTTTCTAAAGAATTATTGTATTCCTTCTTTGACGCAAAAAGTGAAAATAAACATACA
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
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22 CGCTTTAAAGACGCTGTTCTAACTGTTCATGAGCAAGCAGTGTTTCTAATGCGAGAATTA
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
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23 AATGAGCGCAAAGGAAAATATGAATATCAAGTGATTAGTCCATTGGAAAGAACTTCTTGG
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24 AATGATTATGAAGATATTGTTTCTTTTAAGTTTACTGAATCTATTTTTCCGTATCTGATA
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25 GATTTAAAAGGAACATACACGCAATATTTATTGTCAGACATTGCACAACTAAATAGCAAG
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26 TATTCCATCATTATTTATAAATGGTTAAGCATGAATTATAACCAGTATGACTATTATAAT
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27 GCAAAAGGTGGGCGCAGAGAAAAACAGTTAAATGAATATAAAAATCCAATTATTCCGATT
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28 GAAGAATTACGAAGAATAACTGATACAGAAAAAGAGTATTTAAAATTTTCCAATTTTGAA
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29 GCAAGAGTTTTAAAAAAAGCTGTTGAAGAAATCAACCAATTTACAGTTTTAAATGCGACG
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30 TATGAAAAAATAAAAAAAGGAAACCGAATTGGTTCGATTCAGTTCCATATTACGAAAAAA
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31 CAAATTGCTCCTAATCCTTCTTACAAAATTGGCGATTCTGTGTATGAAGCGCAACAAGCA
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32 GAAAAAGAACAAAATCAAATTACTTTATTTGCGCAGGCAATGCAAAGTCAATACACTACC
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33 ATTTTGATGGAAAATATGTTGATTGGGTACAAAGATATGCAAGATATTGAATTAATGGCA
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34 AGCTTGCAAGAAATGGTTTATCCCTTGTATGACGAGTTGAAAACTCTTAGAGGATTAGAC
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35 GGTGTGAGAAATCACTTAGAATACGTTTCAAGAAAACAAATAGGCTATTCTAAAACTAAT
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36 ATTGTCAAGTATTTAAAAACAGCTATCACACAATATTTGCCAACGGTAAAAATGATGGAT
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37 ATGGATAATAGAGTGTAA
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38 >rep9b:WARNING ID:100.0% COV:100.0% Best_match:contig00023 len=45935 cov=46.6 corr=0 origname=NODE_23_length_45935_cov_46.624847_pilon sw=shovill-spades/1.1.0 date=20230213:3630..4643:rep9b_2_prgW(EF62pC)_CP002494:100.000000
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39 ATGAACGATTTTCAATTTATTTCAGCTAATGAAACCTATAGAAATTTGTATTACCAATTA
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40 CCTAAAGTACTTTTTACATCAGAATTTTATAAGACTATGTCTAATGATAGTAAAATAGCT
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41 TACGCAATGTTGCAAGACCGATGTGAATATTCAATACAAAATAATTGGATTGATCAAGAT
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42 GGGCATATATATTTTATCTTTACACGAAATGAACTGATGGATATTTTAGGGTGTAAAGAA
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43 AATAAAATTGCAAAAATAAAAAAAGAATTAAAAGACAAAAATTTACTTTATGAAAAACGT
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44 ATTCCTCCGAAAAAACTCTCTACTGGTGAATTCAAAAACTATCCAAACAGATTGTATTTA
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45 GGTAAGCTGGAAGTTTCAGCAACAGATGTTTACGCCATCAGTAATGCTAGCTATACAAAT
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46 GAGTTTCCCGAAAGTGGGAAAAACCAACCTTCGGATAAACATGATAAAATCGGCATTTCT
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47 TTCGAAAGTGGGAAAAACCAACGTCCAGAAGAATCCAATAATACCAGTACTTTGTTCGAA
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48 AGTGGGAAAAACCAACCCAATCTATATCTAACTAATTCTTTAGATACAATAGATACAATA
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49 GATACTGAAAAAGAACGATTGCAACAACAATTATTGCTCGATCAATTTTCAGAAGTTCAA
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50 GAGCATACATTTCTTAGCAAAAATAGCTTAAAATTTATTGCTGCCTTTTCTGATACTATT
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51 CAAGAAGCACATGAAATGGTTGGAACAATTATTCGTGCTAAAACTAAAGTAGAAAAAGAA
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52 TACAATATCGTTCTAATTGGTGAAGATTATCAAGAAGAAATAGACAAATGTTTGCGTCGT
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53 GTGATGCATAAAATCAAGACAGATTCTACTGTAAAAAGTCCAAAAGGCCTATTCTACAAG
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54 TCGTTTTACAATTTATTTGTTGAATGTACAATAGAGAAAAAAAGTCATTTAAATAAAAAT
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55 AGTACGGACAACACCCCAGAAATAACTACACATAACTGGATTGAGTATCAATAA
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56 >rep7a:WARNING ID:100.0% COV:100.0% Best_match:contig00048 len=5336 cov=19.5 corr=0 origname=NODE_48_length_5336_cov_19.468228_pilon sw=shovill-spades/1.1.0 date=20230213:3276..4214:rep7a_8_ORF11(pRE25)_X92945:100.000000
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57 ATGAAGAAAATTGATGAAAAATTAGCTGCAGAAATCTCACTAAAAAAACCGGCCGTCTCT
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58 AATAGCCGGTTAAGTAATAGCCGGTTAAGTGGTCAAACTTTGGGAAAATCTCAACCCGCA
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59 TTAAGTTTTGATGCCATGACAATCGTTGGAAATTTGAACAAAACTAATGCTAAAAAGCTA
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60 TCTGACTTTATGAGTGTAGAGCCACAAATACGACTTTGGGATATACTTCAAACAAAGTTT
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61 AAAGCTAAGGCACTTCAAGAAAAAGTTTATATCGAATATGACAAAGTAAAAGCAGATACT
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62 TGGGATAGACGTAATATGCGTGTTGAATTTAATCCCAATAAACTCACACATGAAGAAATG
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63 ATTTGGTTAAAACAAAATATTATCGACTACATGGAAGATGACGGTTTTACAAGATTAGAC
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64 TTAGCTTTTGATTTTGAAGATGATTTGAGCGATTACTATGCAATGACTGATAAAGCAGTT
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65 AAGAAAACTGTTTTTTATGGTCGTAATGGCAAGCCAGAAACAAAATATTTTGGTGTCCGT
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66 GATAGTGATAGATTTATTAGAATTTATAATAAAAAACAAGAACGTAAAGATAACGCAGAT
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67 GTTGAAGTTGTGTCTGAACATTTATGGCGTGTAGAAGTTGAATTAAAAAGAGATATGGTT
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68 GATTACTGGAATGATTGTTTTAATGATTTACACATCTTGAAACCTGCGTGGGCTACTTTA
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69 GAAAAAATTAATGAGCAAGCTATGGTTTATACTTTGTTGCATGAAGAAAGTATGTGGGGA
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70 AAGCTAAGTAAGAATACTAAGACTAAATTTAAAAAATTGATTAGAGAAATATCTCCAATT
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71 GATTTAACGGAATTAATGAAATCGACTTTAAAAGCGAACGAAAAACAATTGCAAAAGCAG
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72 ATTGATTTTTGGCAACGTGAATTTAGGTTTTGGAAGTAA
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73 >repUS43:WARNING ID:100.0% COV:100.0% Best_match:contig00040 len=12074 cov=69.2 corr=0 origname=NODE_40_length_12074_cov_69.205993_pilon sw=shovill-spades/1.1.0 date=20230213:8225..9430:repUS43_1_CDS12738(DOp1)_CP003584:100.000000
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74 TTGGAGGGATTTTTACTGAATGAACAAACTTGGTTACAGCATTTAAAAGAAAAACGCTTG
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75 GCTTATGGACTATCTCAAAACCGTTTAGCTGTTGCGACTGGTATTACAAGGCAGTATCTA
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76 AGCGATATTGAAACAGGAAAAGTCAAGCCATCAGAGGATTTACAGCAGTCCCTTTGGGAA
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77 GCTCTGGAACGCTTCAATCCCGACGCTCCCCTTGAAATGCTGTTTGATTATGTAAGAATT
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78 CGCTTTCCGACAACAGACGTACAGCAGGTGGTCGAAAACATCTTACAACTGAAACTGTCC
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79 TATTTTCTTCATGAGGACTATGGTTTCTATTCTTATTCAGAGCATTATGCTTTAGGCGAC
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80 ATATTCGTCCTTTGCTCCCATGAACTGGACAAAGGAGTTCTGGTGGAATTGAAAGGTCGT
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81 GGGTGCAGACAATTTGAAAGCTATCTTCTGGCACAACAAAGAAGCTGGTATGAGTTCTTT
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82 ATGGACGTTTTGGTGGCTGGCGGTGTGATGAAACGCCTTGACCTTGCCATTAACGATAAG
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83 ACAGGGATTTTAAATATCCCTGTACTCACTGAAAAGTGCCAACAGGAAGAATGTATCTCC
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84 GTCTTCCGCAGTTTTAAAAGCTATCGCAGTGGCGAACTGGTACGCAAAGAGGAAAAGGAA
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85 TGTATGGGAAACACCCTCTATATCGGTTCATTACAAAGTGAAGTTTATTTCTGTATCTAT
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86 GAAAAGGACTACGAGCAGTACAAGAAAAATGATATTCCCATTGAAGACGCAGAAGTAAAA
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87 AACCGTTTTGAGATTCGATTGAAAAATGAGCGTGCCTATTATGCAGTCCGTGATTTACTC
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88 GTCTATGACAATCCAGAGCATACCGCCTTTAAAATTATCAATCGGTATATCCGTTTTGTA
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89 GATAAAGACGATTCCAAACCTCGTTCTGATTGGAAACTGAATGAAGAATGGGCTTGGTTT
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90 ATTGGGAACAATCGTGAACGATTAAAACTAACCACAAAACCAGAGCCTTACTCCTTCCAA
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91 AGGACGCTGAACTGGCTATCTCATCAAGTTGCCCCGACCTTAAAGGTTGCGATTAAACTT
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92 GATGAAATCAACCAGACGCAGGTTGTAAAAGACATTCTCGACCATGCGAAACTGACAGAC
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93 CGACACAAGCAGATTTTGAAGCAACAGTCAGTAAAAGAACAGGACGTGATAACAACAAAA
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94 AAATAA