Mercurial > repos > pimarin > abromicsextractor

annotate test-data/bakta/bakta_summary.txt @ 0:a157d29ef11d draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
author pimarin
date Mon, 15 May 2023 14:20:18 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
1 Sequence(s):
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
2 Length: 3027634
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
3 Count: 100
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
4 GC: 37.3
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
5 N50: 99915
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
6 N ratio: 0.0
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
7 coding density: 87.7
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
8
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
9 Annotation:
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
10 tRNAs: 59
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
11 tmRNAs: 1
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
12 rRNAs: 6
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
13 ncRNAs: 36
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
14 ncRNA regions: 44
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
15 CRISPR arrays: 1
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
16 CDSs: 2887
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
17 pseudogenes: 8
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
18 hypotheticals: 302
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
19 signal peptides: 0
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
20 sORFs: 4
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
21 gaps: 0
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
22 oriCs: 4
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
23 oriVs: 0
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
24 oriTs: 0
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
25
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
26 Bakta:
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
27 Software: v1.6.1
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
28 Database: v4.0
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
29 DOI: 10.1099/mgen.0.000685
a157d29ef11d planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
pimarin
parents:
diff changeset
30 URL: github.com/oschwengers/bakta