Mercurial > repos > pimarin > abromics_galaxy_json_extractor
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author | pimarin |
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date | Sun, 04 Jun 2023 17:16:20 +0000 |
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[{"analysis_software_name": "kraken2", "results": {"kraken2": {"name": "taxonomy_report", "file_path": "test/data/dummy/kraken2/taxonomy_report.tsv", "hid": "", "content": [{"fragment_coverage": 100.0, "fragment_number": 95, "assigned_fragment_number": 0, "rank_code": "R", "ncbi_taxonomic_id": 1, "scientific_name": "root"}, {"fragment_coverage": 100.0, "fragment_number": 95, "assigned_fragment_number": 0, "rank_code": "R1", "ncbi_taxonomic_id": 131567, "scientific_name": "cellular_organisms"}, {"fragment_coverage": 100.0, "fragment_number": 95, "assigned_fragment_number": 4, "rank_code": "D", "ncbi_taxonomic_id": 2, "scientific_name": "Bacteria"}, {"fragment_coverage": 95.79, "fragment_number": 91, "assigned_fragment_number": 0, "rank_code": "D1", "ncbi_taxonomic_id": 1783272, "scientific_name": "Terrabacteria_group"}, {"fragment_coverage": 95.79, "fragment_number": 91, "assigned_fragment_number": 0, "rank_code": "P", "ncbi_taxonomic_id": 1239, "scientific_name": "Firmicutes"}, {"fragment_coverage": 95.79, "fragment_number": 91, "assigned_fragment_number": 4, "rank_code": "C", "ncbi_taxonomic_id": 91061, "scientific_name": "Bacilli"}, {"fragment_coverage": 89.47, "fragment_number": 85, "assigned_fragment_number": 8, "rank_code": "O", "ncbi_taxonomic_id": 186826, "scientific_name": "Lactobacillales"}, {"fragment_coverage": 78.95, "fragment_number": 75, "assigned_fragment_number": 0, "rank_code": "F", "ncbi_taxonomic_id": 81852, "scientific_name": "Enterococcaceae"}, {"fragment_coverage": 78.95, "fragment_number": 75, "assigned_fragment_number": 7, "rank_code": "G", "ncbi_taxonomic_id": 1350, "scientific_name": "Enterococcus"}, {"fragment_coverage": 66.32, "fragment_number": 63, "assigned_fragment_number": 42, "rank_code": "S", "ncbi_taxonomic_id": 1351, "scientific_name": "Enterococcus_faecalis"}, {"fragment_coverage": 6.32, "fragment_number": 6, "assigned_fragment_number": 6, "rank_code": "S1", "ncbi_taxonomic_id": 699186, "scientific_name": "Enterococcus_faecalis_R712"}, {"fragment_coverage": 6.32, "fragment_number": 6, "assigned_fragment_number": 6, "rank_code": "S1", "ncbi_taxonomic_id": 1287066, "scientific_name": "Enterococcus_faecalis_DENG1"}, {"fragment_coverage": 5.26, "fragment_number": 5, "assigned_fragment_number": 5, "rank_code": "S1", "ncbi_taxonomic_id": 1201292, "scientific_name": "Enterococcus_faecalis_ATCC_29212"}, {"fragment_coverage": 2.11, "fragment_number": 2, "assigned_fragment_number": 2, "rank_code": "S1", "ncbi_taxonomic_id": 565651, "scientific_name": "Enterococcus_faecalis_ARO1/DG"}, {"fragment_coverage": 2.11, "fragment_number": 2, "assigned_fragment_number": 2, "rank_code": "S1", "ncbi_taxonomic_id": 1206105, "scientific_name": "Enterococcus_faecalis_D32"}, {"fragment_coverage": 4.21, "fragment_number": 4, "assigned_fragment_number": 4, "rank_code": "S", "ncbi_taxonomic_id": 1352, "scientific_name": "Enterococcus_faecium"}, {"fragment_coverage": 1.05, "fragment_number": 1, "assigned_fragment_number": 1, "rank_code": "S", "ncbi_taxonomic_id": 37734, "scientific_name": "Enterococcus_casseliflavus"}, {"fragment_coverage": 2.11, "fragment_number": 2, "assigned_fragment_number": 0, "rank_code": "F", "ncbi_taxonomic_id": 1300, "scientific_name": "Streptococcaceae"}, {"fragment_coverage": 1.05, "fragment_number": 1, "assigned_fragment_number": 0, "rank_code": "G", "ncbi_taxonomic_id": 1301, "scientific_name": "Streptococcus"}, {"fragment_coverage": 1.05, "fragment_number": 1, "assigned_fragment_number": 0, "rank_code": "S", "ncbi_taxonomic_id": 45634, "scientific_name": "Streptococcus_cristatus"}, {"fragment_coverage": 1.05, "fragment_number": 1, "assigned_fragment_number": 1, "rank_code": "S1", "ncbi_taxonomic_id": 1302863, "scientific_name": "Streptococcus_cristatus_AS_1.3089"}, {"fragment_coverage": 1.05, "fragment_number": 1, "assigned_fragment_number": 0, "rank_code": "G", "ncbi_taxonomic_id": 1357, "scientific_name": "Lactococcus"}, {"fragment_coverage": 1.05, "fragment_number": 1, "assigned_fragment_number": 1, "rank_code": "S", "ncbi_taxonomic_id": 1363, "scientific_name": "Lactococcus_garvieae"}, {"fragment_coverage": 2.11, "fragment_number": 2, "assigned_fragment_number": 0, "rank_code": "O", "ncbi_taxonomic_id": 1385, "scientific_name": "Bacillales"}, {"fragment_coverage": 1.05, "fragment_number": 1, "assigned_fragment_number": 0, "rank_code": "F", "ncbi_taxonomic_id": 90964, "scientific_name": "Staphylococcaceae"}, {"fragment_coverage": 1.05, "fragment_number": 1, "assigned_fragment_number": 0, "rank_code": "G", "ncbi_taxonomic_id": 1279, "scientific_name": "Staphylococcus"}, {"fragment_coverage": 1.05, "fragment_number": 1, "assigned_fragment_number": 1, "rank_code": "S", "ncbi_taxonomic_id": 1280, "scientific_name": "Staphylococcus_aureus"}, {"fragment_coverage": 1.05, "fragment_number": 1, "assigned_fragment_number": 0, "rank_code": "F", "ncbi_taxonomic_id": 186817, "scientific_name": "Bacillaceae"}, {"fragment_coverage": 1.05, "fragment_number": 1, "assigned_fragment_number": 0, "rank_code": "G", "ncbi_taxonomic_id": 1386, "scientific_name": "Bacillus"}, {"fragment_coverage": 1.05, "fragment_number": 1, "assigned_fragment_number": 1, "rank_code": "S", "ncbi_taxonomic_id": 38875, "scientific_name": "Bacillus_oleronius"}]}, "seq_classification": {"name": "classification", "file_path": "test/data/dummy/kraken2/taxonomy_result.tsv", "hid": "", "content": {}}}}]