Mercurial > repos > pimarin > abromics_galaxy_json_extractor
view test-data/bracken/bracken_alone_output.json @ 0:c49ec8c0b046 draft
planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
author | pimarin |
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date | Sun, 04 Jun 2023 17:16:20 +0000 |
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[{"analysis_software_name": "bracken", "results": {"bracken": {"name": "bracken_report", "file_path": "test/data/dummy/bracken/bracken_report.tsv", "hid": "", "content": [{"name": "Enterococcus_faecalis", "taxonomy_id": 1351, "taxonomy_lvl": "S", "kraken_assigned_reads": 63, "added_reads": 21, "new_est_reads": 84, "fraction_total_reads": 0.88421}, {"name": "Enterococcus_faecium", "taxonomy_id": 1352, "taxonomy_lvl": "S", "kraken_assigned_reads": 4, "added_reads": 0, "new_est_reads": 4, "fraction_total_reads": 0.04211}, {"name": "Enterococcus_casseliflavus", "taxonomy_id": 37734, "taxonomy_lvl": "S", "kraken_assigned_reads": 1, "added_reads": 0, "new_est_reads": 1, "fraction_total_reads": 0.01053}, {"name": "Streptococcus_cristatus", "taxonomy_id": 45634, "taxonomy_lvl": "S", "kraken_assigned_reads": 1, "added_reads": 0, "new_est_reads": 1, "fraction_total_reads": 0.01053}, {"name": "Lactococcus_garvieae", "taxonomy_id": 1363, "taxonomy_lvl": "S", "kraken_assigned_reads": 1, "added_reads": 0, "new_est_reads": 1, "fraction_total_reads": 0.01053}, {"name": "Staphylococcus_aureus", "taxonomy_id": 1280, "taxonomy_lvl": "S", "kraken_assigned_reads": 1, "added_reads": 0, "new_est_reads": 1, "fraction_total_reads": 0.01053}, {"name": "Bacillus_oleronius", "taxonomy_id": 38875, "taxonomy_lvl": "S", "kraken_assigned_reads": 1, "added_reads": 0, "new_est_reads": 1, "fraction_total_reads": 0.01053}]}}}]