Mercurial > repos > pimarin > abromics_extractor_summarize

diff test-data/bakta/bakta_summary.txt @ 0:35704a6837a7 draft

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planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
author pimarin
date Sun, 04 Jun 2023 17:15:36 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/bakta/bakta_summary.txt	Sun Jun 04 17:15:36 2023 +0000
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+Sequence(s):
+Length: 3027634
+Count: 100
+GC: 37.3
+N50: 99915
+N ratio: 0.0
+coding density: 87.7
+
+Annotation:
+tRNAs: 59
+tmRNAs: 1
+rRNAs: 6
+ncRNAs: 36
+ncRNA regions: 44
+CRISPR arrays: 1
+CDSs: 2887
+pseudogenes: 8
+hypotheticals: 302
+signal peptides: 0
+sORFs: 4
+gaps: 0
+oriCs: 4
+oriVs: 0
+oriTs: 0
+
+Bakta:
+Software: v1.6.1
+Database: v4.0
+DOI: 10.1099/mgen.0.000685
+URL: github.com/oschwengers/bakta