Mercurial > repos > pimarin > abromics_extractor_summarize

comparison test-data/isescan/annotation.gff @ 1:869509bc478e draft

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planemo upload commit 0a5fc6ee1a42b0c1c413de143a01559cb491c2e5-dirty
author pimarin
date Tue, 04 Jul 2023 15:13:40 +0000
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0:35704a6837a7 1:869509bc478e
1 ##gff-version 3
2 contig00001 ISEScan insertion_sequence 104722 106001 . + . ID=contig00001_IS_1;family=IS21;cluster=IS21_259
3 contig00001 ISEScan terminal_inverted_repeat 104722 104735 . + . ID=contig00001_IS_1_TIR;parent=contig00001_IS_1
4 contig00001 ISEScan terminal_inverted_repeat 105988 106001 . + . ID=contig00001_IS_1_TIR;parent=contig00001_IS_1
5 contig00002 ISEScan insertion_sequence 179502 180572 . - . ID=contig00002_IS_1;family=IS200/IS605;cluster=IS200/IS605_96
6 contig00002 ISEScan insertion_sequence 210210 214514 . - . ID=contig00002_IS_2;family=IS21;cluster=IS21_288
7 contig00002 ISEScan terminal_inverted_repeat 210210 210236 . - . ID=contig00002_IS_2_TIR;parent=contig00002_IS_2
8 contig00002 ISEScan terminal_inverted_repeat 214488 214514 . - . ID=contig00002_IS_2_TIR;parent=contig00002_IS_2
9 contig00002 ISEScan insertion_sequence 252678 252900 . + . ID=contig00002_IS_3;family=IS30;cluster=IS30_241
10 contig00005 ISEScan insertion_sequence 54 3033 . + . ID=contig00005_IS_1;family=IS30;cluster=IS30_241
11 contig00005 ISEScan terminal_inverted_repeat 54 67 . + . ID=contig00005_IS_1_TIR;parent=contig00005_IS_1
12 contig00005 ISEScan terminal_inverted_repeat 3020 3033 . + . ID=contig00005_IS_1_TIR;parent=contig00005_IS_1
13 contig00005 ISEScan insertion_sequence 84142 85683 . - . ID=contig00005_IS_2;family=IS21;cluster=IS21_259
14 contig00005 ISEScan terminal_inverted_repeat 84142 84174 . - . ID=contig00005_IS_2_TIR;parent=contig00005_IS_2
15 contig00005 ISEScan terminal_inverted_repeat 85651 85683 . - . ID=contig00005_IS_2_TIR;parent=contig00005_IS_2
16 contig00008 ISEScan insertion_sequence 99798 99915 . - . ID=contig00008_IS_1;family=IS30;cluster=IS30_241
17 contig00010 ISEScan insertion_sequence 1 138 . - . ID=contig00010_IS_1;family=IS6;cluster=IS6_292
18 contig00010 ISEScan insertion_sequence 63216 65257 . - . ID=contig00010_IS_2;family=IS256;cluster=IS256_47
19 contig00010 ISEScan terminal_inverted_repeat 63216 63259 . - . ID=contig00010_IS_2_TIR;parent=contig00010_IS_2
20 contig00010 ISEScan terminal_inverted_repeat 65215 65257 . - . ID=contig00010_IS_2_TIR;parent=contig00010_IS_2
21 contig00010 ISEScan insertion_sequence 65906 67630 . + . ID=contig00010_IS_3;family=IS3;cluster=IS3_176
22 contig00010 ISEScan terminal_inverted_repeat 65906 65936 . + . ID=contig00010_IS_3_TIR;parent=contig00010_IS_3
23 contig00010 ISEScan terminal_inverted_repeat 67600 67630 . + . ID=contig00010_IS_3_TIR;parent=contig00010_IS_3
24 contig00010 ISEScan insertion_sequence 70798 72118 . + . ID=contig00010_IS_4;family=IS256;cluster=IS256_162
25 contig00010 ISEScan terminal_inverted_repeat 70798 70826 . + . ID=contig00010_IS_4_TIR;parent=contig00010_IS_4
26 contig00010 ISEScan terminal_inverted_repeat 72090 72118 . + . ID=contig00010_IS_4_TIR;parent=contig00010_IS_4
27 contig00010 ISEScan insertion_sequence 74315 76017 . + . ID=contig00010_IS_5;family=ISL3;cluster=ISL3_126|ISL3||protein:plasmid:139408
28 contig00010 ISEScan terminal_inverted_repeat 74315 74360 . + . ID=contig00010_IS_5_TIR;parent=contig00010_IS_5
29 contig00010 ISEScan terminal_inverted_repeat 75974 76017 . + . ID=contig00010_IS_5_TIR;parent=contig00010_IS_5
30 contig00010 ISEScan insertion_sequence 81227 82564 . + . ID=contig00010_IS_6;family=IS256;cluster=IS256_162
31 contig00010 ISEScan terminal_inverted_repeat 81227 81253 . + . ID=contig00010_IS_6_TIR;parent=contig00010_IS_6
32 contig00010 ISEScan terminal_inverted_repeat 82538 82564 . + . ID=contig00010_IS_6_TIR;parent=contig00010_IS_6
33 contig00017 ISEScan insertion_sequence 93 1807 . + . ID=contig00017_IS_1;family=ISL3;cluster=ISL3_126|ISL3||protein:plasmid:139408
34 contig00017 ISEScan terminal_inverted_repeat 93 102 . + . ID=contig00017_IS_1_TIR;parent=contig00017_IS_1
35 contig00017 ISEScan terminal_inverted_repeat 1798 1807 . + . ID=contig00017_IS_1_TIR;parent=contig00017_IS_1
36 contig00029 ISEScan insertion_sequence 15381 16432 . - . ID=contig00029_IS_1;family=IS30;cluster=IS30_241
37 contig00029 ISEScan terminal_inverted_repeat 15381 15402 . - . ID=contig00029_IS_1_TIR;parent=contig00029_IS_1
38 contig00029 ISEScan terminal_inverted_repeat 16411 16432 . - . ID=contig00029_IS_1_TIR;parent=contig00029_IS_1
39 contig00030 ISEScan insertion_sequence 23835 23952 . - . ID=contig00030_IS_1;family=IS30;cluster=IS30_241
40 contig00035 ISEScan insertion_sequence 7068 7978 . + . ID=contig00035_IS_1;family=IS3;cluster=IS3_61
41 contig00035 ISEScan terminal_inverted_repeat 7068 7091 . + . ID=contig00035_IS_1_TIR;parent=contig00035_IS_1
42 contig00035 ISEScan terminal_inverted_repeat 7955 7978 . + . ID=contig00035_IS_1_TIR;parent=contig00035_IS_1
43 contig00036 ISEScan insertion_sequence 1 117 . + . ID=contig00036_IS_1;family=IS30;cluster=IS30_241
44 contig00036 ISEScan insertion_sequence 1131 2606 . - . ID=contig00036_IS_2;family=IS3;cluster=IS3_97
45 contig00036 ISEScan terminal_inverted_repeat 1131 1154 . - . ID=contig00036_IS_2_TIR;parent=contig00036_IS_2
46 contig00036 ISEScan terminal_inverted_repeat 2583 2606 . - . ID=contig00036_IS_2_TIR;parent=contig00036_IS_2
47 contig00036 ISEScan insertion_sequence 6170 7474 . + . ID=contig00036_IS_3;family=ISL3;cluster=ISL3_126|ISL3||protein:plasmid:139408
48 contig00036 ISEScan terminal_inverted_repeat 6170 6184 . + . ID=contig00036_IS_3_TIR;parent=contig00036_IS_3
49 contig00036 ISEScan terminal_inverted_repeat 7460 7474 . + . ID=contig00036_IS_3_TIR;parent=contig00036_IS_3
50 contig00036 ISEScan insertion_sequence 9125 10401 . - . ID=contig00036_IS_4;family=IS256;cluster=IS256_162
51 contig00036 ISEScan terminal_inverted_repeat 9125 9140 . - . ID=contig00036_IS_4_TIR;parent=contig00036_IS_4
52 contig00036 ISEScan terminal_inverted_repeat 10386 10401 . - . ID=contig00036_IS_4_TIR;parent=contig00036_IS_4
53 contig00036 ISEScan insertion_sequence 13800 15146 . - . ID=contig00036_IS_5;family=IS256;cluster=IS256_162
54 contig00036 ISEScan terminal_inverted_repeat 13800 13820 . - . ID=contig00036_IS_5_TIR;parent=contig00036_IS_5
55 contig00036 ISEScan terminal_inverted_repeat 15126 15146 . - . ID=contig00036_IS_5_TIR;parent=contig00036_IS_5
56 contig00043 ISEScan insertion_sequence 211 1174 . + . ID=contig00043_IS_1;family=IS256;cluster=IS256_162
57 contig00043 ISEScan terminal_inverted_repeat 211 230 . + . ID=contig00043_IS_1_TIR;parent=contig00043_IS_1
58 contig00043 ISEScan terminal_inverted_repeat 1155 1174 . + . ID=contig00043_IS_1_TIR;parent=contig00043_IS_1
59 contig00043 ISEScan insertion_sequence 5366 6174 . + . ID=contig00043_IS_2;family=IS6;cluster=IS6_292
60 contig00043 ISEScan terminal_inverted_repeat 5366 5383 . + . ID=contig00043_IS_2_TIR;parent=contig00043_IS_2
61 contig00043 ISEScan terminal_inverted_repeat 6157 6174 . + . ID=contig00043_IS_2_TIR;parent=contig00043_IS_2
62 contig00045 ISEScan insertion_sequence 1 117 . + . ID=contig00045_IS_1;family=IS30;cluster=IS30_241
63 contig00053 ISEScan insertion_sequence 261 1613 . + . ID=contig00053_IS_1;family=IS110;cluster=IS110_139
64 contig00053 ISEScan terminal_inverted_repeat 261 280 . + . ID=contig00053_IS_1_TIR;parent=contig00053_IS_1
65 contig00053 ISEScan terminal_inverted_repeat 1594 1613 . + . ID=contig00053_IS_1_TIR;parent=contig00053_IS_1
66 contig00056 ISEScan insertion_sequence 75 1478 . - . ID=contig00056_IS_1;family=ISL3;cluster=ISL3_126|ISL3||protein:plasmid:139408
67 contig00056 ISEScan terminal_inverted_repeat 75 118 . - . ID=contig00056_IS_1_TIR;parent=contig00056_IS_1
68 contig00056 ISEScan terminal_inverted_repeat 1433 1478 . - . ID=contig00056_IS_1_TIR;parent=contig00056_IS_1
69 contig00057 ISEScan insertion_sequence 7 1510 . - . ID=contig00057_IS_1;family=IS3;cluster=IS3_97
70 contig00057 ISEScan terminal_inverted_repeat 7 25 . - . ID=contig00057_IS_1_TIR;parent=contig00057_IS_1
71 contig00057 ISEScan terminal_inverted_repeat 1492 1510 . - . ID=contig00057_IS_1_TIR;parent=contig00057_IS_1
72 contig00058 ISEScan insertion_sequence 1 1299 . - . ID=contig00058_IS_1;family=IS30;cluster=IS30_241
73 contig00058 ISEScan terminal_inverted_repeat 1 127 . - . ID=contig00058_IS_1_TIR;parent=contig00058_IS_1
74 contig00058 ISEScan terminal_inverted_repeat 1173 1299 . - . ID=contig00058_IS_1_TIR;parent=contig00058_IS_1
75 contig00059 ISEScan insertion_sequence 102 592 . + . ID=contig00059_IS_1;family=IS30;cluster=IS30_241
76 contig00059 ISEScan terminal_inverted_repeat 102 114 . + . ID=contig00059_IS_1_TIR;parent=contig00059_IS_1
77 contig00059 ISEScan terminal_inverted_repeat 580 592 . + . ID=contig00059_IS_1_TIR;parent=contig00059_IS_1
78 contig00062 ISEScan insertion_sequence 140 474 . - . ID=contig00062_IS_1;family=IS6;cluster=IS6_292
79 contig00062 ISEScan terminal_inverted_repeat 140 151 . - . ID=contig00062_IS_1_TIR;parent=contig00062_IS_1
80 contig00062 ISEScan terminal_inverted_repeat 463 474 . - . ID=contig00062_IS_1_TIR;parent=contig00062_IS_1
81 contig00070 ISEScan insertion_sequence 1 332 . - . ID=contig00070_IS_1;family=IS6;cluster=IS6_292
82 contig00076 ISEScan insertion_sequence 1 223 . - . ID=contig00076_IS_1;family=IS30;cluster=IS30_241
83 contig00079 ISEScan insertion_sequence 1 255 . - . ID=contig00079_IS_1;family=IS30;cluster=IS30_241
84 contig00083 ISEScan insertion_sequence 1 128 . + . ID=contig00083_IS_1;family=IS6;cluster=IS6_292
85 contig00083 ISEScan insertion_sequence 135 255 . + . ID=contig00083_IS_2;family=IS6;cluster=IS6_292
86 contig00085 ISEScan insertion_sequence 1 255 . + . ID=contig00085_IS_1;family=IS30;cluster=IS30_241
87 contig00090 ISEScan insertion_sequence 1 250 . - . ID=contig00090_IS_1;family=IS6;cluster=IS6_292
88 contig00093 ISEScan insertion_sequence 1 231 . - . ID=contig00093_IS_1;family=IS6;cluster=IS6_292
89 contig00094 ISEScan insertion_sequence 69 206 . + . ID=contig00094_IS_1;family=IS6;cluster=IS6_292
90 contig00096 ISEScan insertion_sequence 1 161 . - . ID=contig00096_IS_1;family=IS30;cluster=IS30_241
91 contig00097 ISEScan insertion_sequence 1 151 . - . ID=contig00097_IS_1;family=IS6;cluster=IS6_292
92 contig00098 ISEScan insertion_sequence 1 138 . + . ID=contig00098_IS_1;family=IS30;cluster=IS30_241