Mercurial > repos > pimarin > abromics_extractor_summarize
comparison abromics_galaxy_json_extractor_summarize.xml @ 2:5a7db3d820c5 draft
planemo upload commit 0a5fc6ee1a42b0c1c413de143a01559cb491c2e5-dirty
| author | pimarin |
|---|---|
| date | Wed, 05 Jul 2023 14:22:57 +0000 |
| parents | 35704a6837a7 |
| children |
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| 1:869509bc478e | 2:5a7db3d820c5 |
|---|---|
| 22 <outputs> | 22 <outputs> |
| 23 <data name="summary_json" format="json" from_work_dir="abromics_summary.json" label="${tool.name} on ${on_string}: Summarized file"/> | 23 <data name="summary_json" format="json" from_work_dir="abromics_summary.json" label="${tool.name} on ${on_string}: Summarized file"/> |
| 24 </outputs> | 24 </outputs> |
| 25 <tests> | 25 <tests> |
| 26 <test expect_num_outputs="1"> <!-- TEST_1 sumarize json results --> | 26 <test expect_num_outputs="1"> <!-- TEST_1 sumarize json results --> |
| 27 <param name="summarize_data" ftype="json" value="abricate/abricate_output.json,bracken/bracken_full_output.json,plasmidfinder/plasmidfinder_output.json"/> | 27 <param name="summarize_data" ftype="json" value="summarize/abricate_output.json,summarize/bracken_full_output.json,summarize/plasmidfinder_output.json"/> |
| 28 <output name="summary_json" ftype="json" value="summarize/summarize.json" compare="sim_size"/> | 28 <output name="summary_json" ftype="json" value="summarize/summarize.json" compare="sim_size"/> |
| 29 </test> | 29 </test> |
| 30 </tests> | 30 </tests> |
| 31 <help><![CDATA[**What it does** | 31 <help><![CDATA[**What it does** |
| 32 Summarize Json output file from abromics_galaxy_json_extractor to only one json file | 32 Summarize Json output file from abromics_galaxy_json_extractor to only one json file |