Mercurial > repos > pimarin > abromics_extractor_summarize

comparison test-data/recentrifuge/rcf_data.tsv @ 0:35704a6837a7 draft

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planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
author pimarin
date Sun, 04 Jun 2023 17:15:36 +0000
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1 Samples /storage/scratch/piemari/60579059/recentrifuge/10_Enterococcus_faecalis_S17_L001 /storage/scratch/piemari/60579059/recentrifuge/10_Enterococcus_faecalis_S17_L001 /storage/scratch/piemari/60579059/recentrifuge/10_Enterococcus_faecalis_S17_L001 Details Details
2 Stats count unassigned score Rank Name
3 Id
4 1 1705098 8766 23.406576938256993 no_rank root
5 2 1696077 41771 23.395425082794883 superkingdom Bacteria
6 1224 656 8 2.5291006275765358 phylum Proteobacteria
7 1236 626 12 2.482047572064056 class Gammaproteobacteria
8 91347 614 1 2.457941868298954 order Enterobacterales
9 543 613 320 2.460424106929107 family Enterobacteriaceae
10 2890311 293 0 3.246096990938595 no_rank Klebsiella/Raoultella group
11 570 293 0 3.246096990938595 genus Klebsiella
12 573 37 37 0.8707595857425035 species Klebsiella pneumoniae
13 1463165 256 256 3.5894074752833425 species Klebsiella quasipneumoniae
14 28211 14 3 3.5108263106101574 class Alphaproteobacteria
15 204455 11 0 3.9118522954498163 order Rhodobacterales
16 31989 11 5 3.9118522954498163 family Rhodobacteraceae
17 2083206 6 0 5.003000134822521 genus Tritonibacter
18 379347 6 6 5.003000134822521 species Tritonibacter mobilis
19 68525 8 2 6.4392025411184886 subphylum delta/epsilon subdivisions
20 29547 6 0 6.491794757763988 class Epsilonproteobacteria
21 213849 6 6 6.491794757763988 order Campylobacterales
22 203691 8 0 2.670556919903863 phylum Spirochaetes
23 203692 8 0 2.670556919903863 class Spirochaetia
24 1643686 8 0 2.670556919903863 order Brachyspirales
25 143786 8 0 2.670556919903863 family Brachyspiraceae
26 29521 8 0 2.670556919903863 genus Brachyspira
27 52584 8 0 2.670556919903863 species Brachyspira pilosicoli
28 759914 8 8 2.670556919903863 strain Brachyspira pilosicoli 95/1000
29 1783257 9 1 5.666318593923775 no_rank PVC group
30 204428 8 0 6.1710253562749955 phylum Chlamydiae
31 204429 8 0 6.1710253562749955 class Chlamydiia
32 1963360 8 0 6.1710253562749955 order Parachlamydiales
33 92713 8 0 6.1710253562749955 family Parachlamydiaceae
34 83551 8 0 6.1710253562749955 genus Parachlamydia
35 83552 8 0 6.1710253562749955 species Parachlamydia acanthamoebae
36 765952 8 8 6.1710253562749955 strain Parachlamydia acanthamoebae UV-7
37 1783270 66 0 2.006752928257857 no_rank FCB group
38 68336 66 0 2.006752928257857 no_rank Bacteroidetes/Chlorobi group
39 976 66 0 2.006752928257857 phylum Bacteroidota
40 117743 16 0 4.41718651898131 class Flavobacteriia
41 200644 16 0 4.41718651898131 order Flavobacteriales
42 49546 10 10 5.956891819839705 family Flavobacteriaceae
43 2762318 6 0 1.8510110175506516 family Weeksellaceae
44 2782232 6 0 1.8510110175506516 no_rank Chryseobacterium group
45 59732 6 6 1.8510110175506516 genus Chryseobacterium
46 200643 50 0 1.2354141792263518 class Bacteroidia
47 171549 50 0 1.2354141792263518 order Bacteroidales
48 815 50 0 1.2354141792263518 family Bacteroidaceae
49 816 50 0 1.2354141792263518 genus Bacteroides
50 817 50 50 1.2354141792263518 species Bacteroides fragilis
51 1783272 1653567 1652 23.34001268644121 no_rank Terrabacteria group
52 1239 1651848 2786 23.34408417992166 phylum Firmicutes
53 91061 1648513 26463 23.367281250244677 class Bacilli
54 1385 1549 105 1.5310126165432292 order Bacillales
55 90964 933 3 1.6488807818855296 family Staphylococcaceae
56 1279 922 364 1.6529169672137187 genus Staphylococcus
57 1280 172 172 4.134921158621555 species Staphylococcus aureus
58 1283 9 9 1.1011853849280868 species Staphylococcus haemolyticus
59 29382 169 169 0.8554142297734083 species Staphylococcus cohnii
60 2815305 208 0 0.9949576979684763 species_group Staphylococcus intermedius group
61 283734 208 208 0.9949576979684763 species Staphylococcus pseudintermedius
62 2803850 8 0 0.793093163911496 genus Mammaliicoccus
63 1296 8 8 0.793093163911496 species Mammaliicoccus sciuri
64 186817 455 134 1.2032272261636583 family Bacillaceae
65 1386 97 13 1.0549176203970638 genus Bacillus
66 86661 41 9 1.1850461843452467 species_group Bacillus cereus group
67 1392 13 13 1.1096346346273416 species Bacillus anthracis
68 1396 8 8 1.0777632709036333 species Bacillus cereus
69 1428 11 11 1.6198538082960143 species Bacillus thuringiensis
70 185979 8 8 0.8301699316132318 no_rank unclassified Bacillus (in: Bacteria)
71 653685 35 9 1.028818211280399 species_group Bacillus subtilis group
72 1938374 26 2 0.9773258338876348 species_subgroup Bacillus amyloliquefaciens group
73 1390 12 12 1.0423283671465575 species Bacillus amyloliquefaciens
74 492670 12 12 0.8648197655965195 species Bacillus velezensis
75 150247 21 1 3.6032022418134697 genus Anoxybacillus
76 247480 14 14 4.178868577006367 species Anoxybacillus caldiproteolyticus
77 2639704 6 0 2.672897239210963 no_rank unclassified Anoxybacillus
78 1636720 6 6 2.672897239210963 species Anoxybacillus sp. PDR2
79 2837504 203 1 0.6082599491575995 genus Heyndrickxia
80 38875 195 195 0.4574625508975431 species Heyndrickxia oleronia
81 1476025 7 7 4.842030537629395 species Heyndrickxia vini
82 186818 10 4 0.8776692512548797 family Planococcaceae
83 1372 6 6 1.183068030563869 genus Planococcus
84 186820 14 2 0.8690075588200579 family Listeriaceae
85 1637 12 12 0.9052546679909343 genus Listeria
86 186822 17 0 1.2111399791152304 family Paenibacillaceae
87 44249 17 17 1.2111399791152304 genus Paenibacillus
88 186823 6 6 0.7696180525672581 family Alicyclobacillaceae
89 539002 9 9 0.6676970796195962 no_rank Bacillales incertae sedis
90 186826 1620501 13929 23.438078410183238 order Lactobacillales
91 1300 6499 343 8.950766344236197 family Streptococcaceae
92 1301 5588 912 9.324347536844721 genus Streptococcus
93 1307 16 16 1.5477643732288435 species Streptococcus suis
94 1308 730 730 3.96659053092353 species Streptococcus thermophilus
95 1311 109 109 2.1198590513226216 species Streptococcus agalactiae
96 1313 43 43 1.30377206625794 species Streptococcus pneumoniae
97 1314 13 13 1.1410197570750837 species Streptococcus pyogenes
98 1348 15 15 4.238633601332688 species Streptococcus parauberis
99 45634 304 0 4.466371036054079 species Streptococcus cristatus
100 1302863 304 304 4.466371036054079 strain Streptococcus cristatus AS 1.3089
101 119603 213 4 5.907772289285088 species_group Streptococcus dysgalactiae group
102 1336 209 0 6.002867303618146 species Streptococcus equi
103 40041 209 209 6.002867303618146 subspecies Streptococcus equi subsp. zooepidemicus
104 315405 3221 1 12.057447943466315 species Streptococcus gallolyticus
105 53354 3220 0 12.06105003425735 subspecies Streptococcus gallolyticus subsp. gallolyticus
106 990317 3220 3220 12.06105003425735 strain Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069
107 2608887 12 12 4.040673378780668 no_rank unclassified Streptococcus
108 1357 568 16 1.8038867754253172 genus Lactococcus
109 1358 85 17 2.9759019163062628 species Lactococcus lactis
110 1360 68 9 3.1673295430623827 subspecies Lactococcus lactis subsp. lactis
111 1046624 59 59 3.3693793853069898 strain Lactococcus lactis subsp. lactis IO-1
112 1359 97 97 2.8685547465494197 species Lactococcus cremoris
113 1363 213 213 1.0441656096319267 species Lactococcus garvieae
114 1366 129 129 1.528012433305227 species Lactococcus raffinolactis
115 2643510 28 1 2.0332664205808824 no_rank unclassified Lactococcus
116 2816910 27 27 2.091019486184282 species Lactococcus sp. LG1267
117 33958 153 39 1.2333772766877353 family Lactobacillaceae
118 1253 9 9 1.2609888230893362 genus Pediococcus
119 1578 28 17 1.0157277094629367 genus Lactobacillus
120 147802 11 11 1.2357711002890166 species Lactobacillus iners
121 46255 6 6 0.7397900915153407 genus Weissella
122 2742598 9 9 1.419764724364403 genus Limosilactobacillus
123 2759736 6 6 1.6054278158689648 genus Lacticaseibacillus
124 2767842 10 0 1.2858255140682764 genus Lactiplantibacillus
125 1590 10 10 1.2858255140682764 species Lactiplantibacillus plantarum
126 2767885 17 4 1.7265763187666388 genus Latilactobacillus
127 1599 13 13 1.5066888443924613 species Latilactobacillus sakei
128 2767886 9 0 1.398328241873101 genus Levilactobacillus
129 1580 9 9 1.398328241873101 species Levilactobacillus brevis
130 2767887 14 7 0.598606789402397 genus Ligilactobacillus
131 1624 7 7 0.7636517432199416 species Ligilactobacillus salivarius
132 2767889 6 6 1.2492772274230424 genus Loigolactobacillus
133 81852 1599685 921 23.559535176620216 family Enterococcaceae
134 1350 1598695 64275 23.566991570231448 genus Enterococcus
135 1351 1531613 1510052 23.668248263678578 species Enterococcus faecalis
136 226185 21 21 0.38435018791238007 strain Enterococcus faecalis V583
137 474186 33 33 0.40064354059738017 strain Enterococcus faecalis OG1RF
138 565651 1670 1670 2.8545355118080313 strain Enterococcus faecalis ARO1/DG
139 699186 2753 2753 3.57789453794821 strain Enterococcus faecalis R712
140 1157365 24 24 0.9432657281093839 strain Enterococcus faecalis EnGen0107
141 1201292 2351 2351 8.186838413433843 strain Enterococcus faecalis ATCC 29212
142 1206105 1218 1218 2.0340956240102512 strain Enterococcus faecalis D32
143 1287066 13491 13491 3.6306104825402294 strain Enterococcus faecalis DENG1
144 1352 1782 1776 2.591998705389451 species Enterococcus faecium
145 1158600 6 6 1.4376070661915603 strain Enterococcus faecium ATCC 8459 = NRRL B-2354
146 1353 6 6 1.3396929056537363 species Enterococcus gallinarum
147 1354 129 129 1.2135478557261825 species Enterococcus hirae
148 33945 176 176 3.4731254588207925 species Enterococcus avium
149 37734 117 117 3.6337486681979128 species Enterococcus casseliflavus
150 44008 163 163 1.2180773813893313 species Enterococcus cecorum
151 53345 183 183 4.158614968772894 species Enterococcus durans
152 53346 18 18 3.7767835297172416 species Enterococcus mundtii
153 118060 36 36 2.495243825038598 species Enterococcus rotai
154 160453 33 33 3.5229405344436837 species Enterococcus gilvus
155 1805431 8 8 2.580826752808647 species Enterococcus saigonensis
156 2005703 14 14 7.807370084132559 species Enterococcus wangshanyuanii
157 2608891 142 11 1.764832744365358 no_rank unclassified Enterococcus
158 2582830 131 131 1.804257856185198 species Enterococcus sp. M190262
159 2737 50 12 1.5892104699251237 genus Vagococcus
160 218144 11 11 2.7248547482928465 species Vagococcus carniphilus
161 633807 21 21 1.4273307820801826 species Vagococcus penaei
162 2714947 6 6 1.6019980684696447 species Vagococcus hydrophili
163 33969 9 0 1.4531669487922143 genus Melissococcus
164 33970 9 9 1.4531669487922143 species Melissococcus plutonius
165 51668 10 10 1.221592140263402 genus Tetragenococcus
166 186827 24 1 1.4419914958056321 family Aerococcaceae
167 1375 17 7 1.6149265102205854 genus Aerococcus
168 1377 10 10 1.5748583749325622 species Aerococcus viridans
169 2689587 6 0 0.8603355588458771 genus Suicoccus
170 2036206 6 6 0.8603355588458771 species Suicoccus acidiformans
171 186828 211 2 2.818108437721708 family Carnobacteriaceae
172 2747 197 89 2.8269564507766582 genus Carnobacterium
173 2751 21 21 5.768927251679546 species Carnobacterium maltaromaticum
174 147709 35 0 0.8868865283829857 species Carnobacterium inhibens
175 1266845 35 35 0.8868865283829857 subspecies Carnobacterium inhibens subsp. gilichinskyi
176 257487 52 0 1.5168016352448308 no_rank unclassified Carnobacterium
177 208596 52 52 1.5168016352448308 species Carnobacterium sp. 17-4
178 1470540 12 12 2.9328747714756394 genus Jeotgalibaca
179 186801 420 9 1.7953874695058052 class Clostridia
180 186802 411 41 1.75553519563304 order Eubacteriales
181 31979 44 0 2.0738127026600917 family Clostridiaceae
182 1485 44 9 2.0738127026600917 genus Clostridium
183 1491 6 6 5.854468629326717 species Clostridium botulinum
184 1502 29 1 1.5883848967108667 species Clostridium perfringens
185 883064 28 28 1.5400709119295324 strain Clostridium perfringens F262
186 186803 19 10 5.110117753725923 family Lachnospiraceae
187 207244 9 0 9.481396423792944 genus Anaerostipes
188 649756 9 9 9.481396423792944 species Anaerostipes hadrus
189 186804 307 1 1.615475527020151 family Peptostreptococcaceae
190 1870884 306 0 1.620142878684913 genus Clostridioides
191 1496 306 306 1.620142878684913 species Clostridioides difficile
192 526524 40 0 3.077947620267509 class Erysipelotrichia
193 526525 40 0 3.077947620267509 order Erysipelotrichales
194 128827 40 40 3.077947620267509 family Erysipelotrichaceae
195 1737404 89 0 6.446806729756411 class Tissierellia
196 1737405 89 0 6.446806729756411 order Tissierellales
197 1570339 89 0 6.446806729756411 family Peptoniphilaceae
198 162289 89 1 6.446806729756411 genus Peptoniphilus
199 54006 88 88 6.502217253636913 species Peptoniphilus ivorii
200 201174 50 0 1.8529176000849532 phylum Actinobacteria
201 1760 50 10 1.8529176000849532 class Actinomycetia
202 85006 7 7 6.253699226891209 order Micrococcales
203 85011 33 0 0.7209126998313955 order Streptomycetales
204 2062 33 0 0.7209126998313955 family Streptomycetaceae
205 1883 33 5 0.7209126998313955 genus Streptomyces
206 2593676 28 0 0.781301999103657 no_rank unclassified Streptomyces
207 2099583 22 22 0.6282086319176973 species Streptomyces sp. ICC1
208 2099584 6 6 1.3426443454521761 species Streptomyces sp. ICC4
209 544448 17 1 1.7949411008239513 phylum Tenericutes
210 31969 7 0 1.295527684915119 class Mollicutes
211 2085 7 0 1.295527684915119 order Mycoplasmatales
212 2092 7 1 1.295527684915119 family Mycoplasmataceae
213 2767358 6 6 1.4264149521288634 genus Mycoplasmopsis
214 2790996 9 1 2.2705782121667033 order Mycoplasmoidales
215 2895623 8 0 1.396993081280134 family Metamycoplasmataceae
216 2895509 8 0 1.396993081280134 genus Metamycoplasma
217 2098 8 8 1.396993081280134 species Metamycoplasma hominis
218 2157 31 0 4.238254159773117 superkingdom Archaea
219 28890 7 0 2.6483733912147787 phylum Euryarchaeota
220 2283794 7 0 2.6483733912147787 no_rank Methanomada group
221 183925 7 0 2.6483733912147787 class Methanobacteria
222 2158 7 0 2.6483733912147787 order Methanobacteriales
223 2159 7 0 2.6483733912147787 family Methanobacteriaceae
224 2172 7 1 2.6483733912147787 genus Methanobrevibacter
225 83816 6 0 2.9956069978485034 species Methanobrevibacter ruminantium
226 634498 6 6 2.9956069978485034 strain Methanobrevibacter ruminantium M1
227 1783275 24 2 4.701969383935966 no_rank TACK group
228 651137 22 0 4.833030004650398 phylum Thaumarchaeota
229 31932 22 0 4.833030004650398 order Nitrosopumilales
230 338190 22 0 4.833030004650398 family Nitrosopumilaceae
231 338191 22 0 4.833030004650398 genus Nitrosopumilus
232 1580092 22 22 4.833030004650398 species Nitrosopumilus adriaticus
233 2759 158 0 3.7577410515006657 superkingdom Eukaryota
234 33154 158 0 3.7577410515006657 no_rank Opisthokonta
235 4751 25 0 1.1301603777565976 kingdom Fungi
236 451864 25 0 1.1301603777565976 subkingdom Dikarya
237 4890 25 0 1.1301603777565976 phylum Ascomycota
238 716545 25 0 1.1301603777565976 no_rank saccharomyceta
239 147537 25 0 1.1301603777565976 subphylum Saccharomycotina
240 4891 25 0 1.1301603777565976 class Saccharomycetes
241 4892 25 0 1.1301603777565976 order Saccharomycetales
242 115784 10 0 1.3132361338061045 family Phaffomycetaceae
243 460517 10 0 1.3132361338061045 genus Komagataella
244 460519 10 0 1.3132361338061045 species Komagataella phaffii
245 644223 10 10 1.3132361338061045 strain Komagataella phaffii GS115
246 2916678 15 0 1.008109873723593 no_rank CUG-Ser1 clade
247 766764 15 0 1.008109873723593 family Debaryomycetaceae
248 1535325 15 0 1.008109873723593 no_rank Candida/Lodderomyces clade
249 5475 15 0 1.008109873723593 genus Candida
250 42374 15 0 1.008109873723593 species Candida dubliniensis
251 573826 15 15 1.008109873723593 strain Candida dubliniensis CD36
252 33208 133 0 4.251647193181881 kingdom Metazoa
253 6072 133 0 4.251647193181881 no_rank Eumetazoa
254 33213 133 0 4.251647193181881 no_rank Bilateria
255 33511 133 0 4.251647193181881 no_rank Deuterostomia
256 7711 133 0 4.251647193181881 phylum Chordata
257 89593 133 0 4.251647193181881 subphylum Craniata
258 7742 133 0 4.251647193181881 no_rank Vertebrata
259 7776 133 0 4.251647193181881 no_rank Gnathostomata
260 117570 133 0 4.251647193181881 no_rank Teleostomi
261 117571 133 0 4.251647193181881 no_rank Euteleostomi
262 8287 133 0 4.251647193181881 superclass Sarcopterygii
263 1338369 133 0 4.251647193181881 no_rank Dipnotetrapodomorpha
264 32523 133 0 4.251647193181881 no_rank Tetrapoda
265 32524 133 0 4.251647193181881 no_rank Amniota
266 40674 133 0 4.251647193181881 class Mammalia
267 32525 133 0 4.251647193181881 no_rank Theria
268 9347 133 0 4.251647193181881 no_rank Eutheria
269 1437010 133 0 4.251647193181881 no_rank Boreoeutheria
270 314146 133 0 4.251647193181881 superorder Euarchontoglires
271 9443 133 0 4.251647193181881 order Primates
272 376913 133 0 4.251647193181881 suborder Haplorrhini
273 314293 133 0 4.251647193181881 infraorder Simiiformes
274 9526 133 0 4.251647193181881 parvorder Catarrhini
275 314295 133 0 4.251647193181881 superfamily Hominoidea
276 9604 133 0 4.251647193181881 family Hominidae
277 207598 133 0 4.251647193181881 subfamily Homininae
278 9605 133 0 4.251647193181881 genus Homo
279 9606 133 133 4.251647193181881 species Homo sapiens
280 10239 66 0 4.761562706518553 superkingdom Viruses
281 2731341 41 0 4.775296347886017 no_rank Duplodnaviria
282 2731360 41 0 4.775296347886017 kingdom Heunggongvirae
283 2731618 41 0 4.775296347886017 phylum Uroviricota
284 2731619 41 0 4.775296347886017 class Caudoviricetes
285 10699 41 0 4.775296347886017 family Siphoviridae
286 196894 41 0 4.775296347886017 no_rank unclassified Siphoviridae
287 1747326 41 41 4.775296347886017 species Enterococcus phage vB_EfaS_IME197
288 2732004 25 0 4.7390395346759115 no_rank Varidnaviria
289 2732005 25 0 4.7390395346759115 kingdom Bamfordvirae
290 2732007 25 0 4.7390395346759115 phylum Nucleocytoviricota
291 2732523 25 0 4.7390395346759115 class Megaviricetes
292 2732554 25 0 4.7390395346759115 order Imitervirales
293 549779 25 0 4.7390395346759115 family Mimiviridae
294 985780 25 0 4.7390395346759115 no_rank unclassified Mimiviridae
295 985782 25 0 4.7390395346759115 species Moumouvirus
296 1269028 25 25 4.7390395346759115 no_rank Acanthamoeba polyphaga moumouvirus