Mercurial > repos > pimarin > abromics_extractor_summarize

annotate test-data/plasmidfinder/plasmid_hit.fasta @ 3:b35f42891c7b draft default tip

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planemo upload commit 8721cd95e02dd6b3a02e2eb549cd8ff6b1675ff8-dirty
author pimarin
date Sun, 23 Jul 2023 13:36:37 +0000
parents 35704a6837a7
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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1 >contig00051 len=2083 cov=17.5 corr=0 origname=NODE_51_length_2083_cov_17.526074_pilon sw=shovill-spades/1.1.0 date=20230213:127..897:repUS12_2_repB(SAP014A)_GQ900379:88.013699
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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2 ATGTGTCCTAATAGTAGCATTTATTCAGATGAAAAATCAAGGGTTTTAGTGGACAAGACA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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3 AAAAGTGGAAAAGTGAGACCATGGAGAGAAAAGAAAATCGCTAATGTTGATTACTTTGAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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4 CTTCTGCATATTCTTGAATTTAAAAAGGCTGAAAGAGTAAAAGATTGTGCTGAAATATTA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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5 GAGTATAAACAAAATCGTGAAACAGGCGAAAGAAAGTTGTATCGAGTGTGGTTTTGTAAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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6 TCCAGGCTTTGTCCAATGTGCAACTGGAGGAGAGCAATGAAACATGGCATTCAGTCACAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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7 AAGGTTGTTGCTGAAGTTATTAAACAAAAGCCAACAGTTCGTTGGTTGTTTCTCACATTA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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8 ACAGTTAAAAATGTTTATGATGGCGAAGAATTAAATAAGAGTTTGTCAGATATGGCTCAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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9 GGATTTCGCCGAATGATGCAATATAAAAAAATTAATAAAAATCTTGTTGGTTTTATGCGT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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10 GCAACGGAAGTGACAATAAATAATAAAGATAATTCTTATAATCAGCACATGCATGTATTG
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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11 GTATGTGTGGAACCAACTTATTTTAAGAATACAGAAAACTACGTGAATCAAAAACAATGG
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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12 ATTCAATTTTGGAAAAAGGCAATGAAATTAGACTATGATCCAAATGTAAAAGTTCAAATG
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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13 ATTCGACCGAAAAATAAATATAAATCGGATATACAATCGGCAATTGACGAAACTGCAAAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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14 TATCCTGTAAAGGATACGGATTTTATGACCGATGATGAAGAAAAGAATTTGAAACGTTTG
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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15 TCTGATTTGGAGGAAGGTTTACACCGTAAAAGGTTAATCTCCTATGGTGGTTTGTTAAAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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16 GAAATACATAAAAAATTAGGTTCTGTTGCAAAGTAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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17 >contig00026 len=35051 cov=66.2 corr=0 origname=NODE_26_length_35051_cov_66.162954_pilon sw=shovill-spades/1.1.0 date=20230213:21156..22313:repUS40_1_repB(pE394)_KP399637:100.000000
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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18 ATGCTCAATTCTAGTATATCACGAAAGGTACTTATGATGAATGACATTCAAAACAAAAAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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19 ATAGTTCAAGACAATGATTTAATTGTAAGTGTCGCAAAAATGGATAAGACACCCATGAAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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20 TTTTTTGAATTAGCAGTCGCCAGTTTAGATATTAAGAATATTCCTGCTGATCGAACTGTT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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21 CATGTTTCTAAAGAATTATTGTATTCCTTCTTTGACGCAAAAAGTGAAAATAAACATACA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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22 CGCTTTAAAGACGCTGTTCTAACTGTTCATGAGCAAGCAGTGTTTCTAATGCGAGAATTA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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23 AATGAGCGCAAAGGAAAATATGAATATCAAGTGATTAGTCCATTGGAAAGAACTTCTTGG
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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24 AATGATTATGAAGATATTGTTTCTTTTAAGTTTACTGAATCTATTTTTCCGTATCTGATA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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25 GATTTAAAAGGAACATACACGCAATATTTATTGTCAGACATTGCACAACTAAATAGCAAG
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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26 TATTCCATCATTATTTATAAATGGTTAAGCATGAATTATAACCAGTATGACTATTATAAT
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27 GCAAAAGGTGGGCGCAGAGAAAAACAGTTAAATGAATATAAAAATCCAATTATTCCGATT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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28 GAAGAATTACGAAGAATAACTGATACAGAAAAAGAGTATTTAAAATTTTCCAATTTTGAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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29 GCAAGAGTTTTAAAAAAAGCTGTTGAAGAAATCAACCAATTTACAGTTTTAAATGCGACG
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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30 TATGAAAAAATAAAAAAAGGAAACCGAATTGGTTCGATTCAGTTCCATATTACGAAAAAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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31 CAAATTGCTCCTAATCCTTCTTACAAAATTGGCGATTCTGTGTATGAAGCGCAACAAGCA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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32 GAAAAAGAACAAAATCAAATTACTTTATTTGCGCAGGCAATGCAAAGTCAATACACTACC
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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33 ATTTTGATGGAAAATATGTTGATTGGGTACAAAGATATGCAAGATATTGAATTAATGGCA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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34 AGCTTGCAAGAAATGGTTTATCCCTTGTATGACGAGTTGAAAACTCTTAGAGGATTAGAC
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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35 GGTGTGAGAAATCACTTAGAATACGTTTCAAGAAAACAAATAGGCTATTCTAAAACTAAT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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36 ATTGTCAAGTATTTAAAAACAGCTATCACACAATATTTGCCAACGGTAAAAATGATGGAT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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37 ATGGATAATAGAGTGTAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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38 >contig00023 len=45935 cov=46.6 corr=0 origname=NODE_23_length_45935_cov_46.624847_pilon sw=shovill-spades/1.1.0 date=20230213:3630..4643:rep9b_2_prgW(EF62pC)_CP002494:100.000000
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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39 ATGAACGATTTTCAATTTATTTCAGCTAATGAAACCTATAGAAATTTGTATTACCAATTA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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40 CCTAAAGTACTTTTTACATCAGAATTTTATAAGACTATGTCTAATGATAGTAAAATAGCT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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41 TACGCAATGTTGCAAGACCGATGTGAATATTCAATACAAAATAATTGGATTGATCAAGAT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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42 GGGCATATATATTTTATCTTTACACGAAATGAACTGATGGATATTTTAGGGTGTAAAGAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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43 AATAAAATTGCAAAAATAAAAAAAGAATTAAAAGACAAAAATTTACTTTATGAAAAACGT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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44 ATTCCTCCGAAAAAACTCTCTACTGGTGAATTCAAAAACTATCCAAACAGATTGTATTTA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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45 GGTAAGCTGGAAGTTTCAGCAACAGATGTTTACGCCATCAGTAATGCTAGCTATACAAAT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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46 GAGTTTCCCGAAAGTGGGAAAAACCAACCTTCGGATAAACATGATAAAATCGGCATTTCT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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47 TTCGAAAGTGGGAAAAACCAACGTCCAGAAGAATCCAATAATACCAGTACTTTGTTCGAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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48 AGTGGGAAAAACCAACCCAATCTATATCTAACTAATTCTTTAGATACAATAGATACAATA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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49 GATACTGAAAAAGAACGATTGCAACAACAATTATTGCTCGATCAATTTTCAGAAGTTCAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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50 GAGCATACATTTCTTAGCAAAAATAGCTTAAAATTTATTGCTGCCTTTTCTGATACTATT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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51 CAAGAAGCACATGAAATGGTTGGAACAATTATTCGTGCTAAAACTAAAGTAGAAAAAGAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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52 TACAATATCGTTCTAATTGGTGAAGATTATCAAGAAGAAATAGACAAATGTTTGCGTCGT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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53 GTGATGCATAAAATCAAGACAGATTCTACTGTAAAAAGTCCAAAAGGCCTATTCTACAAG
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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54 TCGTTTTACAATTTATTTGTTGAATGTACAATAGAGAAAAAAAGTCATTTAAATAAAAAT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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55 AGTACGGACAACACCCCAGAAATAACTACACATAACTGGATTGAGTATCAATAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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56 >contig00048 len=5336 cov=19.5 corr=0 origname=NODE_48_length_5336_cov_19.468228_pilon sw=shovill-spades/1.1.0 date=20230213:3276..4214:rep7a_8_ORF11(pRE25)_X92945:100.000000
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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57 ATGAAGAAAATTGATGAAAAATTAGCTGCAGAAATCTCACTAAAAAAACCGGCCGTCTCT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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58 AATAGCCGGTTAAGTAATAGCCGGTTAAGTGGTCAAACTTTGGGAAAATCTCAACCCGCA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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59 TTAAGTTTTGATGCCATGACAATCGTTGGAAATTTGAACAAAACTAATGCTAAAAAGCTA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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60 TCTGACTTTATGAGTGTAGAGCCACAAATACGACTTTGGGATATACTTCAAACAAAGTTT
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61 AAAGCTAAGGCACTTCAAGAAAAAGTTTATATCGAATATGACAAAGTAAAAGCAGATACT
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pimarin
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62 TGGGATAGACGTAATATGCGTGTTGAATTTAATCCCAATAAACTCACACATGAAGAAATG
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63 ATTTGGTTAAAACAAAATATTATCGACTACATGGAAGATGACGGTTTTACAAGATTAGAC
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64 TTAGCTTTTGATTTTGAAGATGATTTGAGCGATTACTATGCAATGACTGATAAAGCAGTT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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65 AAGAAAACTGTTTTTTATGGTCGTAATGGCAAGCCAGAAACAAAATATTTTGGTGTCCGT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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66 GATAGTGATAGATTTATTAGAATTTATAATAAAAAACAAGAACGTAAAGATAACGCAGAT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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67 GTTGAAGTTGTGTCTGAACATTTATGGCGTGTAGAAGTTGAATTAAAAAGAGATATGGTT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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68 GATTACTGGAATGATTGTTTTAATGATTTACACATCTTGAAACCTGCGTGGGCTACTTTA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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69 GAAAAAATTAATGAGCAAGCTATGGTTTATACTTTGTTGCATGAAGAAAGTATGTGGGGA
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70 AAGCTAAGTAAGAATACTAAGACTAAATTTAAAAAATTGATTAGAGAAATATCTCCAATT
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pimarin
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71 GATTTAACGGAATTAATGAAATCGACTTTAAAAGCGAACGAAAAACAATTGCAAAAGCAG
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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72 ATTGATTTTTGGCAACGTGAATTTAGGTTTTGGAAGTAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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73 >contig00040 len=12074 cov=69.2 corr=0 origname=NODE_40_length_12074_cov_69.205993_pilon sw=shovill-spades/1.1.0 date=20230213:8225..9430:repUS43_1_CDS12738(DOp1)_CP003584:100.000000
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pimarin
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74 TTGGAGGGATTTTTACTGAATGAACAAACTTGGTTACAGCATTTAAAAGAAAAACGCTTG
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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75 GCTTATGGACTATCTCAAAACCGTTTAGCTGTTGCGACTGGTATTACAAGGCAGTATCTA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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76 AGCGATATTGAAACAGGAAAAGTCAAGCCATCAGAGGATTTACAGCAGTCCCTTTGGGAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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77 GCTCTGGAACGCTTCAATCCCGACGCTCCCCTTGAAATGCTGTTTGATTATGTAAGAATT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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78 CGCTTTCCGACAACAGACGTACAGCAGGTGGTCGAAAACATCTTACAACTGAAACTGTCC
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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79 TATTTTCTTCATGAGGACTATGGTTTCTATTCTTATTCAGAGCATTATGCTTTAGGCGAC
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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80 ATATTCGTCCTTTGCTCCCATGAACTGGACAAAGGAGTTCTGGTGGAATTGAAAGGTCGT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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81 GGGTGCAGACAATTTGAAAGCTATCTTCTGGCACAACAAAGAAGCTGGTATGAGTTCTTT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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82 ATGGACGTTTTGGTGGCTGGCGGTGTGATGAAACGCCTTGACCTTGCCATTAACGATAAG
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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83 ACAGGGATTTTAAATATCCCTGTACTCACTGAAAAGTGCCAACAGGAAGAATGTATCTCC
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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84 GTCTTCCGCAGTTTTAAAAGCTATCGCAGTGGCGAACTGGTACGCAAAGAGGAAAAGGAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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85 TGTATGGGAAACACCCTCTATATCGGTTCATTACAAAGTGAAGTTTATTTCTGTATCTAT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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86 GAAAAGGACTACGAGCAGTACAAGAAAAATGATATTCCCATTGAAGACGCAGAAGTAAAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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87 AACCGTTTTGAGATTCGATTGAAAAATGAGCGTGCCTATTATGCAGTCCGTGATTTACTC
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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88 GTCTATGACAATCCAGAGCATACCGCCTTTAAAATTATCAATCGGTATATCCGTTTTGTA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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89 GATAAAGACGATTCCAAACCTCGTTCTGATTGGAAACTGAATGAAGAATGGGCTTGGTTT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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90 ATTGGGAACAATCGTGAACGATTAAAACTAACCACAAAACCAGAGCCTTACTCCTTCCAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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91 AGGACGCTGAACTGGCTATCTCATCAAGTTGCCCCGACCTTAAAGGTTGCGATTAAACTT
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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92 GATGAAATCAACCAGACGCAGGTTGTAAAAGACATTCTCGACCATGCGAAACTGACAGAC
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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93 CGACACAAGCAGATTTTGAAGCAACAGTCAGTAAAAGAACAGGACGTGATAACAACAAAA
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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94 AAATAA