Mercurial > repos > pimarin > abromics_extractor_summarize

annotate test-data/integronfinder2/results.integrons @ 3:b35f42891c7b draft default tip

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planemo upload commit 8721cd95e02dd6b3a02e2eb549cd8ff6b1675ff8-dirty
author pimarin
date Sun, 23 Jul 2023 13:36:37 +0000
parents 35704a6837a7
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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1 # cmd: integron_finder --cpu 4 --local-max --eagle-eyes --promoter-attI --pdf --gbk --keep-tmp --outdir /storage/scratch/piemari/60579123/integronfinder/integronfinder_10_Enterococcus_faecalis_S17_L001 /storage/scratch/piemari/60579123/integronfinder/10_Enterococcus_faecalis_S17_L001.fasta
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
parents:
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2 ID_integron ID_replicon element pos_beg pos_end strand evalue type_elt annotation model type default distance_2attC considered_topology
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
parents:
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3 integron_01 contig00017 contig00017_42 41235 41546 -1 NA protein protein NA CALIN No NA lin
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
parents:
diff changeset
4 integron_01 contig00017 contig00017_43 41543 42391 -1 NA protein protein NA CALIN No NA lin
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
parents:
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5 integron_01 contig00017 attc_001 41600 41701 -1 0.15 attC attC attc_4 CALIN No NA lin
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
parents:
diff changeset
6 integron_01 contig00017 contig00017_44 42419 43705 -1 NA protein protein NA CALIN No NA lin
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
parents:
diff changeset
7 integron_01 contig00017 contig00017_45 43702 45213 -1 NA protein protein NA CALIN No NA lin
35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
parents:
diff changeset
8 integron_01 contig00017 attc_002 44054 44100 -1 0.095 attC attC attc_4 CALIN No 2353.0 lin