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changeset 4:0f9dfaada8ef draft

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Uploaded
author petrn
date Fri, 20 Dec 2019 12:32:17 +0000
parents 8f7909cf86df
children 7e55ef6f9a05
files repex_full_clustering.xml repex_tarean.xml
diffstat 2 files changed, 2 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/repex_full_clustering.xml	Fri Dec 20 11:22:25 2019 +0000
+++ b/repex_full_clustering.xml	Fri Dec 20 12:32:17 2019 +0000
@@ -34,6 +34,7 @@
      <requirement type="package">bioconductor-biostrings</requirement>
    </requirements>
     <command >
+      make -C ${__tool_directory__};
       export PYTHONHASHSEED=0;
       ${__tool_directory__}/seqclust --sample ${sample} --output_dir=tarean_output --logfile=${log} --cleanup $paired --taxon $taxon
 
--- a/repex_tarean.xml	Fri Dec 20 11:22:25 2019 +0000
+++ b/repex_tarean.xml	Fri Dec 20 12:32:17 2019 +0000
@@ -34,6 +34,7 @@
     </requirements>
 
   <command detect_errors="exit_code">
+    make -C ${__tool_directory__};
     export PYTHONHASHSEED=0;
     ${__tool_directory__}/seqclust --paired --sample ${sample} --output_dir=tarean_output --logfile=${log} --cleanup --tarean_mode
     #if $advanced_options.advanced: