# HG changeset patch
# User petrn
# Date 1577974407 0
# Node ID ac3abb440e3f6fea7e47897aef8ab27e2cb65a5b
# Parent  09c1934e0c45e17d8dc84294a311eff888ee7866
Uploaded

diff -r 09c1934e0c45 -r ac3abb440e3f repex_tarean.xml
--- a/repex_tarean.xml	Thu Jan 02 14:13:10 2020 +0000
+++ b/repex_tarean.xml	Thu Jan 02 14:13:27 2020 +0000
@@ -7,11 +7,9 @@
     </stdio>
     <description>Identification of genomic tandem repeats from NGS data</description>
     <requirements>
-      <requirement type="package" version="1.0">repex_tarean</requirement>
-      <requirement type="set_environment">REPEX</requirement>
       <requirement type="package" version="3.7">python</requirement>
       <requirement type="package" version="0.9.1" >pyrserve</requirement>
-      <requirement type="package" >last</requirement>
+      <requirement type="package" version="1021" >last</requirement>
       <requirement type="package">mafft</requirement>
       <requirement type="package">imagemagick</requirement>
       <requirement type="package">blast</requirement>
@@ -33,12 +31,11 @@
       <requirement type="package">r-rsqlite</requirement>
       <requirement type="package">r-rserve</requirement>
       <requirement type="package">bioconductor-biostrings</requirement>
+      <requirement type="set_environment">REPEX</requirement>
     </requirements>
-
   <command detect_errors="exit_code">
-    make -C ${__tool_directory__};
     export PYTHONHASHSEED=0;
-    ${__tool_directory__}/seqclust --paired --sample ${sample} --output_dir=tarean_output --logfile=${log} --cleanup --tarean_mode
+    \${REPEX}/seqclust --paired --sample ${sample} --output_dir=tarean_output --logfile=${log} --cleanup --tarean_mode
     #if $advanced_options.advanced:
       --mincl $advanced_options.size_threshold $advanced_options.keep_names $advanced_options.automatic_filtering -M $advanced_options.merging
       #if $advanced_options.custom_library.options_custom_library :