# HG changeset patch
# User petrn
# Date 1577974390 0
# Node ID 09c1934e0c45e17d8dc84294a311eff888ee7866
# Parent  b4195377038d2c0401f35b944d6dc381f61255a2
Uploaded

diff -r b4195377038d -r 09c1934e0c45 repex_full_clustering.xml
--- a/repex_full_clustering.xml	Thu Jan 02 14:12:13 2020 +0000
+++ b/repex_full_clustering.xml	Thu Jan 02 14:13:10 2020 +0000
@@ -10,7 +10,7 @@
    <requirements>
      <requirement type="package" version="3.7">python</requirement>
      <requirement type="package" version="0.9.1" >pyrserve</requirement>
-     <requirement type="package">last</requirement>
+     <requirement type="package" version="1021" >last</requirement>
      <requirement type="package">mafft</requirement>
      <requirement type="package">imagemagick</requirement>
      <requirement type="package">blast</requirement>
@@ -32,11 +32,11 @@
      <requirement type="package">r-rsqlite</requirement>
      <requirement type="package">r-rserve</requirement>
      <requirement type="package">bioconductor-biostrings</requirement>
+     <requirement type="set_environment">REPEX</requirement>
    </requirements>
     <command >
-      make -C ${__tool_directory__};
       export PYTHONHASHSEED=0;
-      ${__tool_directory__}/seqclust --sample ${sample} --output_dir=tarean_output --logfile=${log} --cleanup $paired --taxon $taxon
+      \${REPEX}/seqclust --sample ${sample} --output_dir=tarean_output --logfile=${log} --cleanup $paired --taxon $taxon
 
       #if $advanced_options.advanced:
       --mincl $advanced_options.size_threshold $advanced_options.keep_names $advanced_options.automatic_filtering  -D $advanced_options.blastx.options_blastx