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comparison repex_tarean.xml @ 15:993c01ddfdd4 draft

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author petrn
date Thu, 02 Jan 2020 14:17:04 +0000
parents ac3abb440e3f
children 1306b1d0f551
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14:ac3abb440e3f 15:993c01ddfdd4
29 <requirement type="package">r-optparse</requirement> 29 <requirement type="package">r-optparse</requirement>
30 <requirement type="package">r-dbi</requirement> 30 <requirement type="package">r-dbi</requirement>
31 <requirement type="package">r-rsqlite</requirement> 31 <requirement type="package">r-rsqlite</requirement>
32 <requirement type="package">r-rserve</requirement> 32 <requirement type="package">r-rserve</requirement>
33 <requirement type="package">bioconductor-biostrings</requirement> 33 <requirement type="package">bioconductor-biostrings</requirement>
34 <requirement name="repex_tarean" version="1.0"></requirement>
34 <requirement type="set_environment">REPEX</requirement> 35 <requirement type="set_environment">REPEX</requirement>
35 </requirements> 36 </requirements>
36 <command detect_errors="exit_code"> 37 <command detect_errors="exit_code">
37 export PYTHONHASHSEED=0; 38 export PYTHONHASHSEED=0;
38 \${REPEX}/seqclust --paired --sample ${sample} --output_dir=tarean_output --logfile=${log} --cleanup --tarean_mode 39 \${REPEX}/seqclust --paired --sample ${sample} --output_dir=tarean_output --logfile=${log} --cleanup --tarean_mode