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comparison repex_full_clustering.xml @ 17:7ba7048d9579 draft

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author petrn
date Thu, 02 Jan 2020 14:19:51 +0000
parents 09c1934e0c45
children 12318e81cbc5
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16:1306b1d0f551 17:7ba7048d9579
30 <requirement type="package">r-optparse</requirement> 30 <requirement type="package">r-optparse</requirement>
31 <requirement type="package">r-dbi</requirement> 31 <requirement type="package">r-dbi</requirement>
32 <requirement type="package">r-rsqlite</requirement> 32 <requirement type="package">r-rsqlite</requirement>
33 <requirement type="package">r-rserve</requirement> 33 <requirement type="package">r-rserve</requirement>
34 <requirement type="package">bioconductor-biostrings</requirement> 34 <requirement type="package">bioconductor-biostrings</requirement>
35 <requirement type="package" version="1.0">repex_tarean</requirement>
35 <requirement type="set_environment">REPEX</requirement> 36 <requirement type="set_environment">REPEX</requirement>
36 </requirements> 37 </requirements>
37 <command > 38 <command >
38 export PYTHONHASHSEED=0; 39 export PYTHONHASHSEED=0;
39 \${REPEX}/seqclust --sample ${sample} --output_dir=tarean_output --logfile=${log} --cleanup $paired --taxon $taxon 40 \${REPEX}/seqclust --sample ${sample} --output_dir=tarean_output --logfile=${log} --cleanup $paired --taxon $taxon