Mercurial > repos > petrn > repeatexplorer

comparison seqclust @ 1:2d43ed150abe draft

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Uploaded
author petrn
date Fri, 20 Dec 2019 08:26:05 +0000
parents f6ebec6e235e
children 94877d063270
comparison
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0:f6ebec6e235e 1:2d43ed150abe
63 PD=os.path.basename(config.PROTEIN_DATABASE), 63 PD=os.path.basename(config.PROTEIN_DATABASE),
64 PDmd5=utils.md5checksum(config.PROTEIN_DATABASE + ".psq", fail_if_missing = not tarean_mode), 64 PDmd5=utils.md5checksum(config.PROTEIN_DATABASE + ".psq", fail_if_missing = not tarean_mode),
65 DD=os.path.basename(config.DNA_DATABASE), 65 DD=os.path.basename(config.DNA_DATABASE),
66 DDmd5=utils.md5checksum(config.DNA_DATABASE + ".nsq")) 66 DDmd5=utils.md5checksum(config.DNA_DATABASE + ".nsq"))
67 67
68 except subprocess.CalledProcessError: 68 except:
69 version_string = "version of pipeline not available!" 69 version_string = "version of pipeline not available!"
70
70 LOGGER.info(version_string) 71 LOGGER.info(version_string)
71 return version_string 72 return version_string
72 73
73 74
74 def valid_database(database_file): 75 def valid_database(database_file):