Mercurial > repos > petrn > repeatexplorer

comparison repex_full_clustering.xml @ 21:26cef01c9066 draft

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Uploaded
author petrn
date Mon, 06 Jan 2020 10:27:41 +0000
parents 12318e81cbc5
children
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20:0ab0aad9e106 21:26cef01c9066
1 <tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2.3.6" > 1 <tool id="repeatexplorer2x" name="RepeatExplorer2 clustering: " version="2.3.6" >
2 <stdio> 2 <stdio>
3 <regex match="lastdb: can't open file: NEAR" source="stderr" level="fatal" description="Version of last is too old, use ver 956 or higher\n" /> 3 <regex match="lastdb: can't open file: NEAR" source="stderr" level="fatal" description="Version of last is too old, use ver 956 or higher\n" />
4 <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" /> 4 <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
5 <regex match="error" source="stderr" level="fatal" description="Unknown error" /> 5 <regex match="error" source="stderr" level="fatal" description="Unknown error" />
6 <regex match="Warning" source="stderr" level="warning" description="Unknown error" /> 6 <regex match="Warning" source="stderr" level="warning" description="Unknown error" />
7 <exit_code range="1:" level="fatal" description="Error" /> 7 <exit_code range="1:" level="fatal" description="Error" />
8 </stdio> 8 </stdio>
9 <description>Improved version or repeat discovery and characterization using graph based sequence clustering</description> 9 <description>Improved version or repeat discovery and characterization using graph based sequence clustering</description>
10 <requirements> 10 <requirements>
11 <requirement type="package" version="3.7">python</requirement>
12 <requirement type="package" version="0.9.1" >pyrserve</requirement> 11 <requirement type="package" version="0.9.1" >pyrserve</requirement>
12 <requirement type="package" version="3.7.4">python</requirement>
13 <requirement type="package">last</requirement> 13 <requirement type="package">last</requirement>
14 <requirement type="package">mafft</requirement> 14 <requirement type="package">mafft</requirement>
15 <requirement type="package">imagemagick</requirement> 15 <requirement type="package">imagemagick</requirement>
16 <requirement type="package">blast</requirement> 16 <requirement type="package">blast</requirement>
17 <requirement type="package">diamond</requirement> 17 <requirement type="package">diamond</requirement>