Mercurial > repos > petrn > repeatexplorer

comparison repex_tarean.xml @ 4:0f9dfaada8ef draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author petrn
date Fri, 20 Dec 2019 12:32:17 +0000
parents 2d43ed150abe
children
comparison
equal deleted inserted replaced
3:8f7909cf86df 4:0f9dfaada8ef
32 <requirement type="package">r-rserve</requirement> 32 <requirement type="package">r-rserve</requirement>
33 <requirement type="package">bioconductor-biostrings</requirement> 33 <requirement type="package">bioconductor-biostrings</requirement>
34 </requirements> 34 </requirements>
35 35
36 <command detect_errors="exit_code"> 36 <command detect_errors="exit_code">
37 make -C ${__tool_directory__};
37 export PYTHONHASHSEED=0; 38 export PYTHONHASHSEED=0;
38 ${__tool_directory__}/seqclust --paired --sample ${sample} --output_dir=tarean_output --logfile=${log} --cleanup --tarean_mode 39 ${__tool_directory__}/seqclust --paired --sample ${sample} --output_dir=tarean_output --logfile=${log} --cleanup --tarean_mode
39 #if $advanced_options.advanced: 40 #if $advanced_options.advanced:
40 --mincl $advanced_options.size_threshold $advanced_options.keep_names $advanced_options.automatic_filtering -M $advanced_options.merging 41 --mincl $advanced_options.size_threshold $advanced_options.keep_names $advanced_options.automatic_filtering -M $advanced_options.merging
41 #if $advanced_options.custom_library.options_custom_library : 42 #if $advanced_options.custom_library.options_custom_library :