Mercurial > repos > petrn > repeatexplorer

comparison repex_tarean.xml @ 20:0ab0aad9e106 draft

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Uploaded
author petrn
date Mon, 06 Jan 2020 10:27:06 +0000
parents d1c9682cedca
children bb426ce3c12b
comparison
equal deleted inserted replaced
19:d1c9682cedca 20:0ab0aad9e106
1 <tool id="tarean" name="Tandem Repeat Analyzer" version="2.3.6" > 1 <tool id="tareanx" name="Tandem Repeat Analyzer" version="2.3.6" >
2 <stdio> 2 <stdio>
3 <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" /> 3 <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
4 <regex match="error" source="stderr" level="fatal" description="Unknown error" /> 4 <regex match="error" source="stderr" level="fatal" description="Unknown error" />
5 <regex match="warning" source="stderr" level="warning" description="Unknown warning" /> 5 <regex match="warning" source="stderr" level="warning" description="Unknown warning" />
6 <exit_code range="1:" level="fatal" description="Error" /> 6 <exit_code range="1:" level="fatal" description="Error" />
7 </stdio> 7 </stdio>
8 <description>Identification of genomic tandem repeats from NGS data</description> 8 <description>Identification of genomic tandem repeats from NGS data</description>
9 <requirements> 9 <requirements>
10 <requirement type="package" version="3.7">python</requirement> 10 <requirement type="package" version="0.9.1">pyrserve</requirement>
11 <requirement type="package" version="0.9.1" >pyrserve</requirement> 11 <requirement type="package" version="3.7.4">python</requirement>
12 <requirement type="package">last</requirement> 12 <requirement type="package">last</requirement>
13 <requirement type="package">mafft</requirement> 13 <requirement type="package">mafft</requirement>
14 <requirement type="package">imagemagick</requirement> 14 <requirement type="package">imagemagick</requirement>
15 <requirement type="package">blast</requirement> 15 <requirement type="package">blast</requirement>
16 <requirement type="package">diamond</requirement> 16 <requirement type="package">diamond</requirement>