Mercurial > repos > petrn > repeatexplorer
annotate 0INFO.md @ 9:511266aa9235 draft
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| author | petrn |
|---|---|
| date | Fri, 20 Dec 2019 14:24:11 +0000 |
| parents | f6ebec6e235e |
| children |
| rev | line source |
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| 0 | 1 # modules and classes in repex |
| 2 | |
| 3 require python3.4 | |
| 4 | |
| 5 ## seqtools | |
| 6 tools for sequence manipulation, reading, sampling | |
| 7 ### Sequence | |
| 8 single sequence container | |
| 9 ### SequenceSet | |
| 10 reading set of seq from fasta file or creating from scratch | |
| 11 use sqlite database | |
| 12 sample | |
| 13 partitioning into chunk | |
| 14 | |
| 15 ## dependencies: | |
| 16 python module parse: | |
| 17 see https://github.com/r1chardj0n3s/parse or https://pypi.python.org/pypi/parse | |
| 18 install by pyp3 istall parse | |
| 19 | |
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