Mercurial > repos > peterjc > venn_list
diff tools/plotting/venn_list.xml @ 4:29fcd027d67a draft
Uploaded v0.0.6 take 1, simple test (which currently fails)
author | peterjc |
---|---|
date | Thu, 16 May 2013 12:43:57 -0400 |
parents | aefc86eda5f6 |
children | 6ebfb498c2c4 |
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--- a/tools/plotting/venn_list.xml Thu May 16 12:43:20 2013 -0400 +++ b/tools/plotting/venn_list.xml Thu May 16 12:43:57 2013 -0400 @@ -1,5 +1,9 @@ -<tool id="venn_list" name="Venn Diagram" version="0.0.3"> +<tool id="venn_list" name="Venn Diagram" version="0.0.6"> <description>from lists</description> + <requirements> + <requirement type="python-module">rpy</requirement> + <requirement type="python-module">Bio</requirement> + </requirements> <command interpreter="python"> venn_list.py #if $universe.type_select=="implicit": @@ -12,6 +16,11 @@ $s.set $s.set.ext "$s.lab" #end for $PDF</command> + <stdio> + <!-- Anything other than zero is an error --> + <exit_code range="1:" /> + <exit_code range=":-1" /> + </stdio> <inputs> <param name="main_lab" size="30" type="text" value="Venn Diagram" label="Plot title"/> <conditional name="universe"> @@ -32,13 +41,9 @@ <outputs> <data format="pdf" name="PDF" /> </outputs> - <requirements> - <requirement type="python-module">rpy</requirement> - <requirement type="python-module">Bio</requirement> - </requirements> <tests> <!-- Doesn't seem to work properly, manages to get two sets, both - with same FASTA file, but second with default "Group" label. + with same FASTA file, but second with default "Group" label. --> <test> <param name="type_select" value="explicit"/> <param name="main" value="venn_list.tabular" ftype="tabular"/> @@ -47,7 +52,6 @@ <param name="lab" value="Rhodopsins"/> <output name="PDF" file="venn_list1.pdf" ftype="pdf"/> </test> - --> <!-- Can't use more than one repeat value in tests (yet) <test> <param name="type_select" value="explicit"/>