Mercurial > repos > peterjc > tmhmm_and_signalp

diff tools/protein_analysis/seq_analysis_utils.py @ 26:20139cb4c844 draft

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planemo upload for repository https://github.com/peterjc/pico_galaxy/tools/protein_analysis commit 221d4187992cbb993e02dc3ea0ef0150c7916a4a-dirty
author peterjc
date Wed, 13 May 2015 06:14:42 -0400
parents 41a42022f815
children 3cb02adf4326
line wrap: on
line diff
--- a/tools/protein_analysis/seq_analysis_utils.py	Fri Nov 21 08:17:36 2014 -0500
+++ b/tools/protein_analysis/seq_analysis_utils.py	Wed May 13 06:14:42 2015 -0400
@@ -14,7 +14,7 @@
 
 __version__ = "0.0.1"
 
-def stop_err(msg, error_level=1):
+def sys_exit(msg, error_level=1):
     """Print error message to stdout and quit with given error level."""
     sys.stderr.write("%s\n" % msg)
     sys.exit(error_level)
@@ -57,7 +57,7 @@
     except:
         num = default
     if num < 1:
-        stop_err("Threads argument %r is not a positive integer" % command_line_arg)
+        sys_exit("Threads argument %r is not a positive integer" % command_line_arg)
     #Cap this with the pysical limit of the machine,
     try:
         num = min(num, cpu_count())