Mercurial > repos > peterjc > tmhmm_and_signalp

comparison tools/protein_analysis/tmhmm2.xml @ 17:af3174637834 draft

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Uploaded v0.2.5 preview 1, adding links to Tool Shed entry
author peterjc
date Thu, 02 May 2013 13:32:58 -0400
parents c6e5a737d3a0
children 4cd848c5590b
comparison
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16:1d5486a02bc4 17:af3174637834
1 <tool id="tmhmm2" name="TMHMM 2.0" version="0.0.10"> 1 <tool id="tmhmm2" name="TMHMM 2.0" version="0.0.11">
2 <description>Find transmembrane domains in protein sequences</description> 2 <description>Find transmembrane domains in protein sequences</description>
3 <!-- If job splitting is enabled, break up the query file into parts --> 3 <!-- If job splitting is enabled, break up the query file into parts -->
4 <!-- Using 2000 chunks meaning 4 threads doing 500 each is ideal --> 4 <!-- Using 2000 chunks meaning 4 threads doing 500 each is ideal -->
5 <parallelism method="basic" split_inputs="fasta_file" split_mode="to_size" split_size="2000" merge_outputs="tabular_file"></parallelism> 5 <parallelism method="basic" split_inputs="fasta_file" split_mode="to_size" split_size="2000" merge_outputs="tabular_file"></parallelism>
6 <command interpreter="python"> 6 <command interpreter="python">
104 In J. Glasgow et al., eds.: Proc. Sixth Int. Conf. on Intelligent Systems for Molecular Biology, pages 175-182. AAAI Press, 1998. 104 In J. Glasgow et al., eds.: Proc. Sixth Int. Conf. on Intelligent Systems for Molecular Biology, pages 175-182. AAAI Press, 1998.
105 http://www.ncbi.nlm.nih.gov/pubmed/9783223 105 http://www.ncbi.nlm.nih.gov/pubmed/9783223
106 106
107 http://www.cbs.dtu.dk/services/TMHMM/ 107 http://www.cbs.dtu.dk/services/TMHMM/
108 108
109 This wrapper is available to install into other Galaxy Instances via the Galaxy
110 Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp
109 </help> 111 </help>
110 </tool> 112 </tool>