Mercurial > repos > peterjc > tmhmm_and_signalp

comparison tools/protein_analysis/tmhmm2.xml @ 20:a538e182fab3 draft

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Uploaded v0.2.5 preview 4, adding Cock et al. 2003 citation information.
author peterjc
date Tue, 10 Sep 2013 08:55:19 -0400
parents 4cd848c5590b
children 90e3d02f8013
comparison
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19:4cd848c5590b 20:a538e182fab3
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97 **References** 97 **References**
98 98
99 Krogh, Larsson, von Heijne, and Sonnhammer. 99 If you use this Galaxy tool in work leading to a scientific publication please
100 cite the following papers:
101
102 Peter Cock, Bjoern Gruening, Konrad Paszkiewicz and Leighton Pritchard (2013).
103 Galaxy tools and workflows for sequence analysis with applications
104 in molecular plant pathology. PeerJ 1:e167
105 http://dx.doi.org/10.7717/peerj.167
106
107 Krogh, Larsson, von Heijne, and Sonnhammer (2001).
100 Predicting Transmembrane Protein Topology with a Hidden Markov Model: Application to Complete Genomes. 108 Predicting Transmembrane Protein Topology with a Hidden Markov Model: Application to Complete Genomes.
101 J. Mol. Biol. 305:567-580, 2001. 109 J. Mol. Biol. 305:567-580.
102 http://dx.doi.org/10.1006/jmbi.2000.4315 110 http://dx.doi.org/10.1006/jmbi.2000.4315
103 111
104 Sonnhammer, von Heijne, and Krogh. 112 Sonnhammer, von Heijne, and Krogh (1998).
105 A hidden Markov model for predicting transmembrane helices in protein sequences. 113 A hidden Markov model for predicting transmembrane helices in protein sequences.
106 In J. Glasgow et al., eds.: Proc. Sixth Int. Conf. on Intelligent Systems for Molecular Biology, pages 175-182. AAAI Press, 1998. 114 In J. Glasgow et al., eds.: Proc. Sixth Int. Conf. on Intelligent Systems for Molecular Biology, pages 175-182. AAAI Press.
107 http://www.ncbi.nlm.nih.gov/pubmed/9783223 115 http://www.ncbi.nlm.nih.gov/pubmed/9783223
108 116
109 http://www.cbs.dtu.dk/services/TMHMM/ 117 See also http://www.cbs.dtu.dk/services/TMHMM/
110 118
111 This wrapper is available to install into other Galaxy Instances via the Galaxy 119 This wrapper is available to install into other Galaxy Instances via the Galaxy
112 Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp 120 Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp
113 </help> 121 </help>
114 </tool> 122 </tool>