Mercurial > repos > peterjc > tmhmm_and_signalp

comparison tools/protein_analysis/signalp3.xml @ 19:4cd848c5590b draft

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Uploaded v0.2.5 preview 3, use $NSLOTS in the PSORT wrappers.
author peterjc
date Thu, 23 May 2013 12:49:18 -0400
parents af3174637834
children a538e182fab3
comparison
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18:2b35b5c4b7f4 19:4cd848c5590b
5 <parallelism method="basic" split_inputs="fasta_file" split_mode="to_size" split_size="2000" merge_outputs="tabular_file"></parallelism> 5 <parallelism method="basic" split_inputs="fasta_file" split_mode="to_size" split_size="2000" merge_outputs="tabular_file"></parallelism>
6 <command interpreter="python"> 6 <command interpreter="python">
7 signalp3.py $organism $truncate "\$NSLOTS" $fasta_file $tabular_file 7 signalp3.py $organism $truncate "\$NSLOTS" $fasta_file $tabular_file
8 ##Set the number of threads in the runner entry in universe_wsgi.ini 8 ##Set the number of threads in the runner entry in universe_wsgi.ini
9 ##which (on SGE at least) will set the $NSLOTS environment variable. 9 ##which (on SGE at least) will set the $NSLOTS environment variable.
10 ##If the environment variable isn't set, get "", and defaults to one. 10 ##If the environment variable isn't set, get "", and the python wrapper
11 ##defaults to four threads.
11 </command> 12 </command>
12 <stdio> 13 <stdio>
13 <!-- Anything other than zero is an error --> 14 <!-- Anything other than zero is an error -->
14 <exit_code range="1:" /> 15 <exit_code range="1:" />
15 <exit_code range=":-1" /> 16 <exit_code range=":-1" />