Mercurial > repos > peterjc > tmhmm_and_signalp
comparison tools/protein_analysis/tmhmm2.py @ 8:391a142c1e60 draft
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author | peterjc |
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date | Tue, 26 Mar 2013 14:27:44 -0400 |
parents | 5e62aefb2918 |
children | 20139cb4c844 |
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7:5e62aefb2918 | 8:391a142c1e60 |
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46 from seq_analysis_utils import stop_err, split_fasta, run_jobs, thread_count | 46 from seq_analysis_utils import stop_err, split_fasta, run_jobs, thread_count |
47 | 47 |
48 FASTA_CHUNK = 500 | 48 FASTA_CHUNK = 500 |
49 | 49 |
50 if len(sys.argv) != 4: | 50 if len(sys.argv) != 4: |
51 stop_err("Require three arguments, number of threads (int), input protein FASTA file & output tabular file") | 51 stop_err("Require three arguments, number of threads (int), input protein FASTA file & output tabular file") |
52 | 52 |
53 num_threads = thread_count(sys.argv[1], default=4) | 53 num_threads = thread_count(sys.argv[1], default=4) |
54 fasta_file = sys.argv[2] | 54 fasta_file = sys.argv[2] |
55 tabular_file = sys.argv[3] | 55 tabular_file = sys.argv[3] |
56 | 56 |