Mercurial > repos > peterjc > tmhmm_and_signalp

comparison tools/protein_analysis/promoter2.xml @ 28:22e71e53f534 draft

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Capture version of promoter2
author peterjc
date Tue, 01 Sep 2015 08:24:49 -0400
parents 20139cb4c844
children 6d9d7cdf00fc
comparison
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27:9e36a1b9302d 28:22e71e53f534
1 <tool id="promoter2" name="Promoter 2.0" version="0.0.9"> 1 <tool id="promoter2" name="Promoter 2.0" version="0.0.10">
2 <description>Find eukaryotic PolII promoters in DNA sequences</description> 2 <description>Find eukaryotic PolII promoters in DNA sequences</description>
3 <!-- If job splitting is enabled, break up the query file into parts --> 3 <!-- If job splitting is enabled, break up the query file into parts -->
4 <!-- Using 2000 per chunk so 4 threads each doing 500 is ideal --> 4 <!-- Using 2000 per chunk so 4 threads each doing 500 is ideal -->
5 <parallelism method="basic" split_inputs="fasta_file" split_mode="to_size" split_size="2000" merge_outputs="tabular_file"></parallelism> 5 <parallelism method="basic" split_inputs="fasta_file" split_mode="to_size" split_size="2000" merge_outputs="tabular_file"></parallelism>
6 <requirements> 6 <requirements>
10 <stdio> 10 <stdio>
11 <!-- Anything other than zero is an error --> 11 <!-- Anything other than zero is an error -->
12 <exit_code range="1:" /> 12 <exit_code range="1:" />
13 <exit_code range=":-1" /> 13 <exit_code range=":-1" />
14 </stdio> 14 </stdio>
15 <version_command interpreter="python">promoter2.py --version</version_command>
15 <command interpreter="python"> 16 <command interpreter="python">
16 promoter2.py "\$GALAXY_SLOTS" "$fasta_file" "$tabular_file" 17 promoter2.py "\$GALAXY_SLOTS" "$fasta_file" "$tabular_file"
17 ##If the environment variable isn't set, get "", and the python wrapper 18 ##If the environment variable isn't set, get "", and the python wrapper
18 ##defaults to four threads. 19 ##defaults to four threads.
19 </command> 20 </command>