--- a/tools/seq_select_by_id/README.rst	Wed Nov 20 12:13:14 2013 -0500
+++ b/tools/seq_select_by_id/README.rst	Fri Nov 21 08:32:19 2014 -0500
@@ -1,7 +1,7 @@
 Galaxy tool to select FASTA, QUAL, FASTQ or SFF sequences by ID
 ===============================================================
 
-This tool is copyright 2011-2013 by Peter Cock, The James Hutton Institute
+This tool is copyright 2011-2014 by Peter Cock, The James Hutton Institute
 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
 See the licence text below.
 
@@ -36,20 +36,20 @@
 
 There are just two files to install to use this tool from within Galaxy:
 
-* seq_select_by_id.py (the Python script)
-* seq_select_by_id.xml (the Galaxy tool definition)
+* ``seq_select_by_id.py`` (the Python script)
+* ``seq_select_by_id.xml`` (the Galaxy tool definition)
 
-The suggested location is a dedicated tools/seq_select_by_id folder.
+The suggested location is a dedicated ``tools/seq_select_by_id`` folder.
 
-You will also need to modify the tools_conf.xml file to tell Galaxy to offer the
+You will also need to modify the ``tools_conf.xml`` file to tell Galaxy to offer the
 tool. One suggested location is in the filters section. Simply add the line::
 
     <tool file="seq_select_by_id/seq_select_by_id.xml" />
 
-If you wish to run the unit tests, also add this to tools_conf.xml.sample
-and move/copy the test-data files under Galaxy's test-data folder. Then::
+If you wish to run the unit tests, also move/copy the ``test-data/`` files
+under Galaxy's ``test-data/`` folder. Then::
 
-    $ ./run_functional_tests.sh -id seq_select_by_id
+    $ ./run_tests.sh -id seq_select_by_id
 
 You will also need to install Biopython 1.54 or later. That's it.
 
@@ -73,7 +73,10 @@
         - Fixed Biopython dependency setup.
         - Development moved to GitHub, https://github.com/peterjc/pico_galaxy
         - Renamed folder and adopted README.rst naming.
-v0.0.8  - Corrected automated dependency definition
+v0.0.8  - Corrected automated dependency definition.
+v0.0.9  - Simplified XML to apply input format to output data.
+        - Tool definition now embeds citation information.
+        - Include input dataset name in output dataset names.
 ======= ======================================================================