Mercurial > repos > peterjc > seq_primer_clip

comparison tools/primers/seq_primer_clip.xml @ 3:f9ddb43ce28d draft

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Uploaded v0.0.10a, fixes Biopython dependency setup
author peterjc
date Fri, 13 Sep 2013 06:09:54 -0400
parents bd151574bbf3
children
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2:bd151574bbf3 3:f9ddb43ce28d
1 <tool id="seq_primer_clip" name="Primer clip sequences" version="0.0.10"> 1 <tool id="seq_primer_clip" name="Primer clip sequences" version="0.0.10">
2 <description>Trim off 5' or 3' primers</description> 2 <description>Trim off 5' or 3' primers</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.61">biopython</requirement>
4 <requirement type="python-module">Bio</requirement> 5 <requirement type="python-module">Bio</requirement>
5 </requirements> 6 </requirements>
6 <version_command interpreter="python">seq_primer_clip.py --version</version_command> 7 <version_command interpreter="python">seq_primer_clip.py --version</version_command>
7 <command interpreter="python"> 8 <command interpreter="python">
8 seq_primer_clip.py $input_file $input_file.ext $primer_fasta $primer_type $mm $min_len $keep_negatives $output_file 9 seq_primer_clip.py $input_file $input_file.ext $primer_fasta $primer_type $mm $min_len $keep_negatives $output_file