Mercurial > repos > peterjc > secreted_protein_workflow

comparison secreted_protein_workflow.ga @ 6:36b2c2b5051e draft

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Uploaded v0.0.2 with updated tool versions, should fix header_lines warning from Filter1 tool.
author peterjc
date Wed, 21 Aug 2013 11:10:14 -0400
parents 3a6de5cb858d
children ec6f6ba3bc78
comparison
equal deleted inserted replaced
5:5f3cc8229771 6:36b2c2b5051e
60 "output_name": "tabular_file" 60 "output_name": "tabular_file"
61 } 61 }
62 }, 62 },
63 "tool_errors": null, 63 "tool_errors": null,
64 "tool_id": "signalp3", 64 "tool_id": "signalp3",
65 "tool_state": "{\"organism\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"fasta_file\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"truncate\": \"\\\"60\\\"\", \"__page__\": 0}", 65 "tool_state": "{\"__page__\": 0, \"truncate\": \"\\\"60\\\"\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"fasta_file\": \"null\", \"organism\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null}",
66 "tool_version": "0.0.8", 66 "tool_version": "0.0.12",
67 "type": "tool", 67 "type": "tool",
68 "user_outputs": [] 68 "user_outputs": []
69 }, 69 },
70 "2": { 70 "2": {
71 "annotation": "Select proteins with predicted signal peptide (SignalP NN D-Score or HMM)", 71 "annotation": "Select proteins with predicted signal peptide (SignalP NN D-Score or HMM)",
102 "output_name": "out_file1" 102 "output_name": "out_file1"
103 } 103 }
104 }, 104 },
105 "tool_errors": null, 105 "tool_errors": null,
106 "tool_id": "Filter1", 106 "tool_id": "Filter1",
107 "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c14=='Y' or c15=='S'\\\"\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"input\": \"null\"}", 107 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"cond\": \"\\\"c14=='Y' or c15=='S'\\\"\", \"input\": \"null\", \"header_lines\": \"\\\"0\\\"\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}",
108 "tool_version": "1.1.0", 108 "tool_version": "1.1.0",
109 "type": "tool", 109 "type": "tool",
110 "user_outputs": [] 110 "user_outputs": []
111 }, 111 },
112 "3": { 112 "3": {
150 "output_name": "output_pos" 150 "output_name": "output_pos"
151 } 151 }
152 }, 152 },
153 "tool_errors": null, 153 "tool_errors": null,
154 "tool_id": "seq_filter_by_id", 154 "tool_id": "seq_filter_by_id",
155 "tool_state": "{\"__page__\": 0, \"output_choice_cond\": \"{\\\"output_choice\\\": \\\"pos\\\", \\\"__current_case__\\\": 1}\", \"input_file\": \"null\", \"input_tabular\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"columns\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": [\\\"1\\\"]}\"}", 155 "tool_state": "{\"__page__\": 0, \"output_choice_cond\": \"{\\\"output_choice\\\": \\\"pos\\\", \\\"__current_case__\\\": 1}\", \"input_file\": \"null\", \"__rerun_remap_job_id__\": null, \"input_tabular\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"columns\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": [\\\"1\\\"]}\"}",
156 "tool_version": "0.0.1", 156 "tool_version": "0.0.5",
157 "type": "tool", 157 "type": "tool",
158 "user_outputs": [] 158 "user_outputs": []
159 }, 159 },
160 "4": { 160 "4": {
161 "annotation": "", 161 "annotation": "",
185 "output_name": "tabular_file" 185 "output_name": "tabular_file"
186 } 186 }
187 }, 187 },
188 "tool_errors": null, 188 "tool_errors": null,
189 "tool_id": "tmhmm2", 189 "tool_id": "tmhmm2",
190 "tool_state": "{\"__page__\": 0, \"fasta_file\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}", 190 "tool_state": "{\"__page__\": 0, \"fasta_file\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"__rerun_remap_job_id__\": null}",
191 "tool_version": "0.0.7", 191 "tool_version": "0.0.11",
192 "type": "tool", 192 "type": "tool",
193 "user_outputs": [] 193 "user_outputs": []
194 }, 194 },
195 "5": { 195 "5": {
196 "annotation": "Select proteins with no predicted transmembrane helices.", 196 "annotation": "Select proteins with no predicted transmembrane helices.",
227 "output_name": "out_file1" 227 "output_name": "out_file1"
228 } 228 }
229 }, 229 },
230 "tool_errors": null, 230 "tool_errors": null,
231 "tool_id": "Filter1", 231 "tool_id": "Filter1",
232 "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c5== 0\\\"\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"input\": \"null\"}", 232 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"cond\": \"\\\"c5== 0\\\"\", \"input\": \"null\", \"header_lines\": \"\\\"0\\\"\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}",
233 "tool_version": "1.1.0", 233 "tool_version": "1.1.0",
234 "type": "tool", 234 "type": "tool",
235 "user_outputs": [] 235 "user_outputs": []
236 }, 236 },
237 "6": { 237 "6": {
277 "output_name": "output_pos" 277 "output_name": "output_pos"
278 } 278 }
279 }, 279 },
280 "tool_errors": null, 280 "tool_errors": null,
281 "tool_id": "seq_filter_by_id", 281 "tool_id": "seq_filter_by_id",
282 "tool_state": "{\"__page__\": 0, \"output_choice_cond\": \"{\\\"output_choice\\\": \\\"pos\\\", \\\"__current_case__\\\": 1}\", \"input_file\": \"null\", \"input_tabular\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"columns\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": [\\\"1\\\"]}\"}", 282 "tool_state": "{\"__page__\": 0, \"output_choice_cond\": \"{\\\"output_choice\\\": \\\"pos\\\", \\\"__current_case__\\\": 1}\", \"input_file\": \"null\", \"__rerun_remap_job_id__\": null, \"input_tabular\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"columns\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": [\\\"1\\\"]}\"}",
283 "tool_version": "0.0.1", 283 "tool_version": "0.0.5",
284 "type": "tool", 284 "type": "tool",
285 "user_outputs": [] 285 "user_outputs": []
286 } 286 }
287 } 287 }
288 } 288 }