Mercurial > repos > peterjc > rxlr_venn_workflow

comparison README.rst @ 9:d893133128d8 draft

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Uploaded v0.0.1i, try remote linking to image in README.rst
author peterjc
date Mon, 19 Aug 2013 13:27:37 -0400
parents 2dfe8b788fb6
children a24a1614ef11
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8:2dfe8b788fb6 9:d893133128d8
22 * 162 RXLRs using Bhattacharjee et al. (006) 22 * 162 RXLRs using Bhattacharjee et al. (006)
23 23
24 Of these, only 79 sequences pass all three of the RXLR prediction tools, 24 Of these, only 79 sequences pass all three of the RXLR prediction tools,
25 while 19643 have no RXLR matches at all. 25 while 19643 have no RXLR matches at all.
26 26
27 .. image:: Phyca11_example_output.png 27 .. image:: http://raw.github.com/peterjc/picobio/master/galaxy_workflows/rxlr_venn_workflow/Phyca11_example_output.png
28 :height: 400px 28 :height: 400px
29 :width: 400px 29 :width: 400px
30 :alt: RXLR Venn diagram using Phytophthora capsici (Phyca11)
31 30
32 31
33 Citation 32 Citation
34 ======== 33 ========
35 34
95 94
96 https://github.com/peterjc/picobio/tree/master/galaxy_workflows/rxlr_venn_workflow 95 https://github.com/peterjc/picobio/tree/master/galaxy_workflows/rxlr_venn_workflow
97 96
98 To prepare the tar-ball for uploading to the Tool Shed, I use this: 97 To prepare the tar-ball for uploading to the Tool Shed, I use this:
99 98
100 $ tar -cf rxlr_venn_workflow.tar.gz README.rst repository_dependencies.xml rxlr_venn_workflow.ga Phyca11_example_output.png 99 $ tar -cf rxlr_venn_workflow.tar.gz README.rst repository_dependencies.xml rxlr_venn_workflow.ga
101 100
102 Check this, 101 Check this,
103 102
104 $ tar -tzf rxlr_venn_workflow.tar.gz 103 $ tar -tzf rxlr_venn_workflow.tar.gz
105 README.rst 104 README.rst
106 repository_dependencies.xml 105 repository_dependencies.xml
107 rxlr_venn_workflow.ga 106 rxlr_venn_workflow.ga
108 Phyca11_example_output.png