Mercurial > repos > peterjc > rxlr_venn_workflow

comparison README.rst @ 7:51aeb3d4799d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded v0.0.1g, add Phyca11 example to README
author peterjc
date Mon, 19 Aug 2013 12:31:11 -0400
parents b1047023ffbb
children 2dfe8b788fb6
comparison
equal deleted inserted replaced
6:b1047023ffbb 7:51aeb3d4799d
1 This is package is a Galaxy workflow for comparing three RXLR prediction 1 This is package is a Galaxy workflow for comparing three RXLR prediction
2 methods with a Venn Diagram, and creates a FASTA file of any proteins 2 methods with a Venn Diagram, and creates a FASTA file of any proteins
3 passing all three methods. 3 passing all three methods.
4 4
5 See http://www.galaxyproject.org for information about the Galaxy Project. 5 See http://www.galaxyproject.org for information about the Galaxy Project.
6
7
8 Sample Data
9 ===========
10
11 This workflow was developed and run on several Phytophthora species.
12 For example, try the "Phyca11" protein set for Phytophthora capsici:
13
14 http://genome.jgi-psf.org/Phyca11/download/Phyca11_filtered_proteins.fasta.gz
15
16 You can upload this directly into Galaxy via this URL. Galaxy will handle
17 removing the gzip compression to give you the FASTA protein file which
18 has 19,805 protein sequences. Of these, only 79 sequences pass all three
19 of the RXLR prediction tools.
6 20
7 21
8 Citation 22 Citation
9 ======== 23 ========
10 24