# HG changeset patch
# User peterjc
# Date 1441986080 14400
# Node ID 645a9fb69d42622d8ad2129bd941f0acb226f961
# Parent  9876b6e47ec8d4f9442f60eacd7b0755b6f3e99f
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_4_9_5 commit 4fbb738ddbc87132ca11dfaaaa38aa922ac87115-dirty

diff -r 9876b6e47ec8 -r 645a9fb69d42 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Sep 02 06:42:35 2015 -0400
+++ b/tool_dependencies.xml	Fri Sep 11 11:41:20 2015 -0400
@@ -26,7 +26,7 @@
                     <action type="shell_command">uname</action>
                     <action type="shell_command">arch</action>
                     <action type="shell_command">echo "If pre-compiled MIRA binaries are now available for this, please report this"</action>
-                    <action type="shell_command">echo "via https://github.com/peterjc/pico_galaxy/issues - thank you!"</action>
+                    <action type="shell_command">echo "via https://github.com/peterjc/galaxy_mira/issues - thank you!"</action>
                     <action type="shell_command">false</action>
                     <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
                 </actions>
@@ -34,7 +34,7 @@
                 <action type="set_environment">
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
                 </action>
-                <!-- Wrapper requires trailing slash on $MIRA4_9 so make sure there is one (double trailing slash is harmless) -->
+                <!-- Note we append a trailing slash as currently expected by the wrapper XML file -->
                 <action type="set_environment">
                     <environment_variable action="set_to" name="MIRA4_9">$INSTALL_DIR/</environment_variable>
                 </action>
@@ -50,7 +50,8 @@
 http://sourceforge.net/projects/mira-assembler/
 
 The environment variable ``$MIRA4_9`` will point to the folder containing the
-binaries, which is also pre-pended to the``$PATH`` variable.
+binaries (with a trailing slash), and this is also pre-pended to the``$PATH``
+variable.
         </readme>
     </package>
 </tool_dependency>