Mercurial > repos > peterjc > package_mira_4_9_5

comparison tool_dependencies.xml @ 8:b614a5abf31c draft default tip

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planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_4_9_5 commit fd979d17340cde155de176604744831d9597c6b6
author peterjc
date Thu, 18 May 2017 13:38:13 -0400
parents 28020b797d22
children
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7:0098fe3690de 8:b614a5abf31c
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="MIRA" version="4.9.5">
4 <install version="1.0">
5 <actions_group>
6 <!-- Download the binaries for MIRA compatible with 64-bit OSX. -->
7 <!-- Currently unavailable...
8 <actions architecture="x86_64" os="darwin">
9 <action type="download_by_url">http://downloads.sourceforge.net/project/mira-assembler/MIRA/development/mira_4.9.5_2_darwin14.3.0_x86_64_static.tar.bz2</action>
10 <action type="move_directory_files">
11 <source_directory>bin</source_directory>
12 <destination_directory>$INSTALL_DIR</destination_directory>
13 </action>
14 </actions>
15 -->
16 <!-- Download the binaries for MIRA compatible with 64-bit Linux. -->
17 <actions architecture="x86_64" os="linux">
18 <!-- http://downloads.sourceforge.net/project/mira-assembler/MIRA/development/mira_4.9.5_2_linux-gnu_x86_64_static.tar.bz2 -->
19 <action type="download_by_url" sha256sum="3848885cb041cd9bf7aa8f220dd3f084443f5060fa433b669f7d28880ba4c61f">https://depot.galaxyproject.org/software/mira/mira_4.9.5_linux_x64.tar.bz2</action>
20 <action type="move_directory_files">
21 <source_directory>bin</source_directory>
22 <destination_directory>$INSTALL_DIR</destination_directory>
23 </action>
24 </actions>
25 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
26 <actions>
27 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
28 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
29 <action type="shell_command">uname</action>
30 <action type="shell_command">arch</action>
31 <action type="shell_command">echo "If pre-compiled MIRA binaries are now available for this, please report this"</action>
32 <action type="shell_command">echo "via https://github.com/peterjc/galaxy_mira/issues - thank you!"</action>
33 <action type="shell_command">false</action>
34 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
35 </actions>
36 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
37 <action type="set_environment">
38 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
39 </action>
40 <!-- Note we append a trailing slash as currently expected by the wrapper XML file -->
41 <action type="set_environment">
42 <environment_variable action="set_to" name="MIRA4_9">$INSTALL_DIR/</environment_variable>
43 </action>
44 </actions_group>
45 </install>
46 <readme>
47 Downloads MIRA v4.9.5 from Sourceforge, requesting Bastien's precompiled binaries
48 for 64 bit (x86_64) Linux. Currently the Mac OS X binaries are not available.
49
50 Other platforms where compilation from source would be required (e.g. 32 bit Linux)
51 are not supported by this automated installation script.
52
53 http://chevreux.org/projects_mira.html
54 http://sourceforge.net/projects/mira-assembler/
55
56 The environment variable ``$MIRA4_9`` will point to the folder containing the
57 binaries (with a trailing slash), and this is also pre-pended to the``$PATH``
58 variable.
59 </readme>
60 </package>
61 </tool_dependency>