|
6
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <package name="MIRA" version="4.9.5">
|
|
|
4 <install version="1.0">
|
|
|
5 <actions_group>
|
|
|
6 <!-- Download the binaries for MIRA compatible with 64-bit OSX. -->
|
|
|
7 <!-- Currently unavailable...
|
|
|
8 <actions architecture="x86_64" os="darwin">
|
|
|
9 <action type="download_by_url">http://downloads.sourceforge.net/project/mira-assembler/MIRA/development/mira_4.9.5_2_darwin14.3.0_x86_64_static.tar.bz2</action>
|
|
|
10 <action type="move_directory_files">
|
|
|
11 <source_directory>bin</source_directory>
|
|
|
12 <destination_directory>$INSTALL_DIR</destination_directory>
|
|
|
13 </action>
|
|
|
14 </actions>
|
|
|
15 -->
|
|
|
16 <!-- Download the binaries for MIRA compatible with 64-bit Linux. -->
|
|
|
17 <actions architecture="x86_64" os="linux">
|
|
|
18 <!-- http://downloads.sourceforge.net/project/mira-assembler/MIRA/development/mira_4.9.5_2_linux-gnu_x86_64_static.tar.bz2 -->
|
|
|
19 <action type="download_by_url" sha256sum="3848885cb041cd9bf7aa8f220dd3f084443f5060fa433b669f7d28880ba4c61f">https://depot.galaxyproject.org/software/mira/mira_4.9.5_linux_x64.tar.bz2</action>
|
|
|
20 <action type="move_directory_files">
|
|
|
21 <source_directory>bin</source_directory>
|
|
|
22 <destination_directory>$INSTALL_DIR</destination_directory>
|
|
|
23 </action>
|
|
|
24 </actions>
|
|
|
25 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
|
|
|
26 <actions>
|
|
|
27 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
|
|
|
28 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
|
|
|
29 <action type="shell_command">uname</action>
|
|
|
30 <action type="shell_command">arch</action>
|
|
|
31 <action type="shell_command">echo "If pre-compiled MIRA binaries are now available for this, please report this"</action>
|
|
|
32 <action type="shell_command">echo "via https://github.com/peterjc/galaxy_mira/issues - thank you!"</action>
|
|
|
33 <action type="shell_command">false</action>
|
|
|
34 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
|
|
|
35 </actions>
|
|
|
36 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
|
|
|
37 <action type="set_environment">
|
|
|
38 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
|
|
|
39 </action>
|
|
|
40 <!-- Note we append a trailing slash as currently expected by the wrapper XML file -->
|
|
|
41 <action type="set_environment">
|
|
|
42 <environment_variable action="set_to" name="MIRA4_9">$INSTALL_DIR/</environment_variable>
|
|
|
43 </action>
|
|
|
44 </actions_group>
|
|
|
45 </install>
|
|
|
46 <readme>
|
|
|
47 Downloads MIRA v4.9.5 from Sourceforge, requesting Bastien's precompiled binaries
|
|
|
48 for 64 bit (x86_64) Linux. Currently the Mac OS X binaries are not available.
|
|
|
49
|
|
|
50 Other platforms where compilation from source would be required (e.g. 32 bit Linux)
|
|
|
51 are not supported by this automated installation script.
|
|
|
52
|
|
|
53 http://chevreux.org/projects_mira.html
|
|
|
54 http://sourceforge.net/projects/mira-assembler/
|
|
|
55
|
|
|
56 The environment variable ``$MIRA4_9`` will point to the folder containing the
|
|
|
57 binaries (with a trailing slash), and this is also pre-pended to the``$PATH``
|
|
|
58 variable.
|
|
|
59 </readme>
|
|
|
60 </package>
|
|
|
61 </tool_dependency>
|
