# HG changeset patch
# User peterjc
# Date 1485970261 18000
# Node ID 0f1782ae7e932d179a80b817705b16d19e9ec18c
# Parent  788f3a75dccd0ea1beaa0a8a499e5e57fb848d4f
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_4_0_2 commit 20744823cf038fb5e887f7cba0b473d3af404cc3-dirty

diff -r 788f3a75dccd -r 0f1782ae7e93 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Aug 10 11:28:36 2016 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,55 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="MIRA" version="4.0.2">
-        <install version="1.0">
-            <actions_group>
-                <!-- Download the binaries for MIRA compatible with 64-bit OSX. -->
-                <actions architecture="x86_64" os="darwin">
-                    <action type="download_by_url" sha256sum="3cdfba4be7bde1a97b15259b9fd3216c4369d906ea20f5f360f30dc0d83e7b8e">https://depot.galaxyproject.org/software/mira/mira_4.0.2_darwin_x64.tar.bz2</action>
-                    <action type="move_directory_files">
-                         <source_directory>bin</source_directory>
-                         <destination_directory>$INSTALL_DIR</destination_directory>
-                     </action>
-                </actions>
-                <!-- Download the binaries for MIRA compatible with 64-bit Linux. -->
-                <actions architecture="x86_64" os="linux">
-                    <action type="download_by_url" sha256sum="d3c74a6b402192e01d10adb8dbdc3450d4033fa0e7662ce5ce5de4f8c1967813">https://depot.galaxyproject.org/software/mira/mira_4.0.2_linux_x64.tar.bz2</action>
-                    <action type="move_directory_files">
-                        <source_directory>bin</source_directory>
-                        <destination_directory>$INSTALL_DIR</destination_directory>
-                    </action>
-                </actions>
-                <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
-                <actions>
-                    <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
-                    <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
-                    <action type="shell_command">uname</action>
-                    <action type="shell_command">arch</action>
-                    <action type="shell_command">echo "If pre-compiled MIRA binaries are now available for this, please report this"</action>
-                    <action type="shell_command">echo "via https://github.com/peterjc/galaxy_mira/issues - thank you!"</action>
-                    <action type="shell_command">false</action>
-                    <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
-                </actions>
-                <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
-                <action type="set_environment">
-                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
-                </action>
-                <action type="set_environment">
-                    <environment_variable action="set_to" name="MIRA4">$INSTALL_DIR</environment_variable>
-                </action>
-            </actions_group>
-        </install>
-        <readme>
-Downloads MIRA v4.0.2 from Sourceforge, requesting Bastien's precompiled binaries
-for 64 bit (x86_64) Linux or Mac OS X. Other platforms where compilation from
-source would be required (e.g. 32 bit Linux) are not supported by this automated
-installation script.
-
-http://chevreux.org/projects_mira.html
-http://sourceforge.net/projects/mira-assembler/
-
-The environment variable ``$MIRA4`` will point to the folder containing the binaries,
-which is also pre-pended to the``$PATH`` variable.
-        </readme>
-    </package>
-</tool_dependency>