# HG changeset patch
# User peterjc
# Date 1486054233 18000
# Node ID 64920d90983be8e194c0540348ac1584af2589dd
# Parent  a5061014029545027725e786b1f607dc1b63a4c7
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit 5c6f46188dec8364b2306c05cae45ff50d3d3e06-dirty

diff -r a50610140295 -r 64920d90983b tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Feb 02 11:31:39 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,48 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="MIRA" version="3.4.1.1">
-        <install version="1.0">
-            <actions_group>
-                <!-- Download the binaries for MIRA compatible with 64-bit Linux. -->
-                <actions architecture="x86_64" os="linux">
-                    <!-- http://downloads.sourceforge.net/project/mira-assembler/MIRA/Older%20releases/V3.4.0/mira_3.4.1.1_prod_linux-gnu_x86_64_static.tar.bz2 -->
-                    <action type="download_by_url" sha256sum="8843c3efc72f0ca8c7e681f9d81748604127b1d9c01d0234a5e8b3a55b798d5c">https://depot.galaxyproject.org/software/mira/mira_3.4.1.1_linux_x64.tar.bz2</action>
-                    <action type="move_directory_files">
-                        <source_directory>bin</source_directory>
-                       <destination_directory>$INSTALL_DIR</destination_directory>
-                    </action>
-                </actions>
-                <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
-                <actions>
-                    <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
-                    <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
-                    <action type="shell_command">uname</action>
-                    <action type="shell_command">arch</action>
-                    <action type="shell_command">echo "If pre-compiled MIRA binaries are now available for this, please report this"</action>
-                    <action type="shell_command">echo "via https://github.com/peterjc/galaxy_mira/issues - thank you!"</action>
-                    <action type="shell_command">false</action>
-                    <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
-                </actions>
-                <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
-                <action type="set_environment">
-                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
-                </action>
-                <action type="set_environment">
-                    <environment_variable action="set_to" name="MIRA3">$INSTALL_DIR</environment_variable>
-                </action>
-            </actions_group>
-        </install>
-        <readme>
-Downloads MIRA v3.4.1.1 from Sourceforge, requesting Bastien's precompiled binaries
-for 64bit Linux (x86_64). He also has binaries for 32bit Linux (686 only), which we
-could use once the Galaxy installation framework allow that kind of flexibility.
-
-http://chevreux.org/projects_mira.html
-http://sourceforge.net/projects/mira-assembler/
-
-The environment variable ``$MIRA3`` will point to the folder containing the binaries,
-which is also pre-pended to the ``$PATH`` variable.
-        </readme>
-    </package>
-</tool_dependency>
-