Mercurial > repos > peterjc > package_blast_plus_2_7_0

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"planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_7_0/ commit 3f9f39ad808325a11d9967980d2cb82c96d69324"
author peterjc
date Wed, 09 Sep 2020 15:12:25 +0000
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1 <?xml version='1.0' encoding='utf-8'?>
2 <tool_dependency>
3 <package name="blast" version="2.7.0">
4 <install version="1.0">
5 <actions_group>
6 <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. -->
7 <actions os="darwin" architecture="x86_64">
8 <!-- Original URL https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.0/ncbi-blast-2.7.0+-x64-macosx.tar.gz -->
9 <action type="download_by_url" sha256sum="c295aa858638a8194d6b4abbefedaa2759e67ee2932e3553ffbc4afa138b20ee" target_filename="ncbi-blast-2.7.0+-x64-macosx.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.7.0_darwin_x64.tar.gz</action>
10 <action type="move_directory_files">
11 <source_directory>bin</source_directory>
12 <destination_directory>$INSTALL_DIR</destination_directory>
13 </action>
14 </actions>
15 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. -->
16 <actions os="linux" architecture="x86_64">
17 <!-- Original URL https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.0/ncbi-blast-2.7.0+-x64-linux.tar.gz -->
18 <action type="download_by_url" sha256sum="cf61c3a687dae6475e73b571bf06ff92cbbb74a2cdc557f1059d0f12485eb10e" target_filename="ncbi-blast-2.7.0+-x64-linux.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.7.0_linux_x64.tar.gz</action>
19 <action type="move_directory_files">
20 <source_directory>bin</source_directory>
21 <destination_directory>$INSTALL_DIR</destination_directory>
22 </action>
23 </actions>
24 <actions>
25 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not supported."</action>
26 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
27 <action type="shell_command">uname</action>
28 <action type="shell_command">arch</action>
29 <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action>
30 <action type="shell_command">false</action>
31 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
32 </actions>
33 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
34 <action type="set_environment">
35 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
36 <environment_variable name="BLAST_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable>
37 </action>
38 </actions_group>
39 </install>
40 <readme>
41 Downloads the precompiled 64 bit Linux, or Mac OS X BLAST+ binaries from the NCBI,
42 which is faster than performing a local compilation, avoids any issues with build
43 dependencies, and is more reproducible between installations as there is no
44 variability from the compiler or library versions.
45
46 Note that NCBI do not provide any 32 bit binaries anymore.
47
48 For more details, see:
49 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
50 </readme>
51 </package>
52 </tool_dependency>