Mercurial > repos > peterjc > ncbi_blast_plus

diff test-data/tblastn_four_human_vs_rhodopsin.xml @ 3:cf4903f5c81f draft

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Uploaded v0.0.17
author peterjc
date Wed, 17 Apr 2013 09:45:28 -0400
parents b04f55ab182c
children 5ec998a3530c
line wrap: on
line diff
--- a/test-data/tblastn_four_human_vs_rhodopsin.xml	Wed Apr 17 09:44:44 2013 -0400
+++ b/test-data/tblastn_four_human_vs_rhodopsin.xml	Wed Apr 17 09:45:28 2013 -0400
@@ -1,8 +1,8 @@
 <?xml version="1.0"?>
-<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "NCBI_BlastOutput.dtd">
+<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
 <BlastOutput>
   <BlastOutput_program>tblastn</BlastOutput_program>
-  <BlastOutput_version>TBLASTN 2.2.25+</BlastOutput_version>
+  <BlastOutput_version>TBLASTN 2.2.26+</BlastOutput_version>
   <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
   <BlastOutput_db></BlastOutput_db>
   <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
@@ -375,7 +375,7 @@
           <Hit_hsps>
             <Hsp>
               <Hsp_num>1</Hsp_num>
-              <Hsp_bit-score>732.392902459534</Hsp_bit-score>
+              <Hsp_bit-score>732.393</Hsp_bit-score>
               <Hsp_score>1689</Hsp_score>
               <Hsp_evalue>0</Hsp_evalue>
               <Hsp_query-from>1</Hsp_query-from>
@@ -422,7 +422,7 @@
           <Hit_hsps>
             <Hsp>
               <Hsp_num>1</Hsp_num>
-              <Hsp_bit-score>646.119739014374</Hsp_bit-score>
+              <Hsp_bit-score>646.12</Hsp_bit-score>
               <Hsp_score>1489</Hsp_score>
               <Hsp_evalue>0</Hsp_evalue>
               <Hsp_query-from>1</Hsp_query-from>
@@ -469,9 +469,9 @@
           <Hit_hsps>
             <Hsp>
               <Hsp_num>1</Hsp_num>
-              <Hsp_bit-score>151.343146656381</Hsp_bit-score>
+              <Hsp_bit-score>151.343</Hsp_bit-score>
               <Hsp_score>342</Hsp_score>
-              <Hsp_evalue>1.39566684546685e-72</Hsp_evalue>
+              <Hsp_evalue>1.39567e-72</Hsp_evalue>
               <Hsp_query-from>239</Hsp_query-from>
               <Hsp_query-to>312</Hsp_query-to>
               <Hsp_hit-from>3147</Hsp_hit-from>
@@ -488,9 +488,9 @@
             </Hsp>
             <Hsp>
               <Hsp_num>2</Hsp_num>
-              <Hsp_bit-score>126.323929257285</Hsp_bit-score>
+              <Hsp_bit-score>126.324</Hsp_bit-score>
               <Hsp_score>284</Hsp_score>
-              <Hsp_evalue>1.39566684546685e-72</Hsp_evalue>
+              <Hsp_evalue>1.39567e-72</Hsp_evalue>
               <Hsp_query-from>177</Hsp_query-from>
               <Hsp_query-to>235</Hsp_query-to>
               <Hsp_hit-from>2855</Hsp_hit-from>
@@ -507,9 +507,9 @@
             </Hsp>
             <Hsp>
               <Hsp_num>3</Hsp_num>
-              <Hsp_bit-score>229.420359574251</Hsp_bit-score>
+              <Hsp_bit-score>229.42</Hsp_bit-score>
               <Hsp_score>523</Hsp_score>
-              <Hsp_evalue>9.84654801241353e-65</Hsp_evalue>
+              <Hsp_evalue>9.34154e-67</Hsp_evalue>
               <Hsp_query-from>11</Hsp_query-from>
               <Hsp_query-to>121</Hsp_query-to>
               <Hsp_hit-from>1</Hsp_hit-from>
@@ -526,9 +526,9 @@
             </Hsp>
             <Hsp>
               <Hsp_num>4</Hsp_num>
-              <Hsp_bit-score>122.873002719478</Hsp_bit-score>
+              <Hsp_bit-score>122.873</Hsp_bit-score>
               <Hsp_score>276</Hsp_score>
-              <Hsp_evalue>1.40732096096596e-32</Hsp_evalue>
+              <Hsp_evalue>1.03783e-32</Hsp_evalue>
               <Hsp_query-from>119</Hsp_query-from>
               <Hsp_query-to>177</Hsp_query-to>
               <Hsp_hit-from>1404</Hsp_hit-from>
@@ -545,9 +545,9 @@
             </Hsp>
             <Hsp>
               <Hsp_num>5</Hsp_num>
-              <Hsp_bit-score>57.7367643183824</Hsp_bit-score>
+              <Hsp_bit-score>57.7368</Hsp_bit-score>
               <Hsp_score>125</Hsp_score>
-              <Hsp_evalue>5.60065526485586e-13</Hsp_evalue>
+              <Hsp_evalue>1.50808e-12</Hsp_evalue>
               <Hsp_query-from>312</Hsp_query-from>
               <Hsp_query-to>337</Hsp_query-to>
               <Hsp_hit-from>4222</Hsp_hit-from>
@@ -592,7 +592,7 @@
           <Hit_hsps>
             <Hsp>
               <Hsp_num>1</Hsp_num>
-              <Hsp_bit-score>658.197981896696</Hsp_bit-score>
+              <Hsp_bit-score>658.198</Hsp_bit-score>
               <Hsp_score>1517</Hsp_score>
               <Hsp_evalue>0</Hsp_evalue>
               <Hsp_query-from>11</Hsp_query-from>
@@ -639,7 +639,7 @@
           <Hit_hsps>
             <Hsp>
               <Hsp_num>1</Hsp_num>
-              <Hsp_bit-score>711.255977415469</Hsp_bit-score>
+              <Hsp_bit-score>711.256</Hsp_bit-score>
               <Hsp_score>1640</Hsp_score>
               <Hsp_evalue>0</Hsp_evalue>
               <Hsp_query-from>1</Hsp_query-from>
@@ -686,7 +686,7 @@
           <Hit_hsps>
             <Hsp>
               <Hsp_num>1</Hsp_num>
-              <Hsp_bit-score>626.708277239213</Hsp_bit-score>
+              <Hsp_bit-score>626.708</Hsp_bit-score>
               <Hsp_score>1444</Hsp_score>
               <Hsp_evalue>0</Hsp_evalue>
               <Hsp_query-from>1</Hsp_query-from>
@@ -719,4 +719,4 @@
       </Iteration_stat>
     </Iteration>
   </BlastOutput_iterations>
-</BlastOutput>
+</BlastOutput>
\ No newline at end of file