Mercurial > repos > peterjc > ncbi_blast_plus

comparison tool-data/blastdb_d.loc.sample @ 6:e77e30f1deeb draft

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Uploaded v0.0.19 preview take 3, fixes RPS-BLAST and RPS-TBLASTN output labelling.
author peterjc
date Thu, 25 Apr 2013 09:01:28 -0400
parents 4afb12181d1a
children
comparison
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5:d42346e675c4 6:e77e30f1deeb
5 #<unique_id> <database_caption> <base_name_path> 5 #<unique_id> <database_caption> <base_name_path>
6 # 6 #
7 #The captions typically contain spaces and might end with the build date. 7 #The captions typically contain spaces and might end with the build date.
8 #It is important that the actual database name does not have a space in it, 8 #It is important that the actual database name does not have a space in it,
9 #and that there are only two tabs on each line. 9 #and that there are only two tabs on each line.
10 #
11 #You can download the NCBI provided databases as tar-balls from here:
12 #ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd/little_endian/
10 # 13 #
11 #So, for example, if your database is CDD and the path to your base name 14 #So, for example, if your database is CDD and the path to your base name
12 #is /data/blastdb/Cdd, then the blastdb_d.loc entry would look like this: 15 #is /data/blastdb/Cdd, then the blastdb_d.loc entry would look like this:
13 # 16 #
14 #Cdd{tab}NCBI Conserved Domains Database (CDD){tab}/data/blastdb/Cdd 17 #Cdd{tab}NCBI Conserved Domains Database (CDD){tab}/data/blastdb/Cdd