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comparison test-data/tblastn_four_human_vs_rhodopsin.html @ 3:cf4903f5c81f draft

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Uploaded v0.0.17
author peterjc
date Wed, 17 Apr 2013 09:45:28 -0400
parents b04f55ab182c
children 5ec998a3530c
comparison
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2:b70b142bbc39 3:cf4903f5c81f
1 <HTML> 1 <HTML>
2 <TITLE>BLAST Search Results</TITLE> 2 <TITLE>BLAST Search Results</TITLE>
3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099"> 3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099">
4 <PRE> 4 <PRE>
5 5
6 <b>TBLASTN 2.2.25+</b> 6 <b>TBLASTN 2.2.26+</b>
7 7
8 8
9 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 9 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
10 OS=Homo sapiens GN=ERP44 PE=1 SV=1 10 OS=Homo sapiens GN=ERP44 PE=1 SV=1
11 11
561 561
562 Length=4301 562 Length=4301
563 563
564 <script src="blastResult.js"></script> 564 <script src="blastResult.js"></script>
565 Score = 151 bits (342), Expect(2) = 1e-72, Method: Compositional matrix adjust. 565 Score = 151 bits (342), Expect(2) = 1e-72, Method: Compositional matrix adjust.
566 Identities = 69/74 (94%), Positives = 73/74 (99%), Gaps = 0/74 (0%) 566 Identities = 69/74 (93%), Positives = 73/74 (99%), Gaps = 0/74 (0%)
567 Frame = +3 567 Frame = +3
568 568
569 Query 239 ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA 298 569 Query 239 ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA 298
570 ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+ 570 ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+
571 Sbjct 3147 ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS 3326 571 Sbjct 3147 ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS 3326
582 Query 177 RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 235 582 Query 177 RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 235
583 RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE + 583 RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +
584 Sbjct 2855 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS 3031 584 Sbjct 2855 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS 3031
585 585
586 586
587 Score = 229 bits (523), Expect = 1e-64, Method: Compositional matrix adjust. 587 Score = 229 bits (523), Expect = 9e-67, Method: Compositional matrix adjust.
588 Identities = 107/111 (97%), Positives = 109/111 (99%), Gaps = 0/111 (0%) 588 Identities = 107/111 (96%), Positives = 109/111 (98%), Gaps = 0/111 (0%)
589 Frame = +1 589 Frame = +1
590 590
591 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70 591 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
592 VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 592 VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
593 Sbjct 1 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180 593 Sbjct 1 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180
596 PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG 596 PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG
597 Sbjct 181 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 333 597 Sbjct 181 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 333
598 598
599 599
600 Score = 122 bits (276), Expect = 1e-32, Method: Compositional matrix adjust. 600 Score = 122 bits (276), Expect = 1e-32, Method: Compositional matrix adjust.
601 Identities = 55/59 (94%), Positives = 56/59 (95%), Gaps = 0/59 (0%) 601 Identities = 55/59 (93%), Positives = 56/59 (95%), Gaps = 0/59 (0%)
602 Frame = +3 602 Frame = +3
603 603
604 Query 119 LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 177 604 Query 119 LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 177
605 L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR 605 L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR
606 Sbjct 1404 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR 1580 606 Sbjct 1404 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR 1580
607 607
608 608
609 Score = 57.7 bits (125), Expect = 6e-13, Method: Compositional matrix adjust. 609 Score = 57.7 bits (125), Expect = 2e-12, Method: Compositional matrix adjust.
610 Identities = 23/26 (89%), Positives = 24/26 (93%), Gaps = 0/26 (0%) 610 Identities = 23/26 (88%), Positives = 24/26 (92%), Gaps = 0/26 (0%)
611 Frame = +1 611 Frame = +1
612 612
613 Query 312 QFRNCMLTTICCGKNPLGDDEASATV 337 613 Query 312 QFRNCMLTTICCGKNPLGDDEASATV 337
614 QFRNCMLTT+CCGKNPLGDDEAS T 614 QFRNCMLTT+CCGKNPLGDDEAS T
615 Sbjct 4222 QFRNCMLTTLCCGKNPLGDDEASTTA 4299 615 Sbjct 4222 QFRNCMLTTLCCGKNPLGDDEASTTA 4299
635 635
636 Length=983 636 Length=983
637 637
638 <script src="blastResult.js"></script> 638 <script src="blastResult.js"></script>
639 Score = 658 bits (1517), Expect = 0.0, Method: Compositional matrix adjust. 639 Score = 658 bits (1517), Expect = 0.0, Method: Compositional matrix adjust.
640 Identities = 310/326 (96%), Positives = 322/326 (99%), Gaps = 0/326 (0%) 640 Identities = 310/326 (95%), Positives = 322/326 (99%), Gaps = 0/326 (0%)
641 Frame = +1 641 Frame = +1
642 642
643 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70 643 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
644 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 644 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
645 Sbjct 1 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180 645 Sbjct 1 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180
685 685
686 Length=1047 686 Length=1047
687 687
688 <script src="blastResult.js"></script> 688 <script src="blastResult.js"></script>
689 Score = 711 bits (1640), Expect = 0.0, Method: Compositional matrix adjust. 689 Score = 711 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
690 Identities = 325/348 (94%), Positives = 337/348 (97%), Gaps = 0/348 (0%) 690 Identities = 325/348 (93%), Positives = 337/348 (97%), Gaps = 0/348 (0%)
691 Frame = +1 691 Frame = +1
692 692
693 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 693 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
694 MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY 694 MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY
695 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY 180 695 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY 180
735 735
736 Length=1344 736 Length=1344
737 737
738 <script src="blastResult.js"></script> 738 <script src="blastResult.js"></script>
739 Score = 626 bits (1444), Expect = 0.0, Method: Compositional matrix adjust. 739 Score = 626 bits (1444), Expect = 0.0, Method: Compositional matrix adjust.
740 Identities = 281/342 (83%), Positives = 311/342 (91%), Gaps = 1/342 (0%) 740 Identities = 281/342 (82%), Positives = 311/342 (91%), Gaps = 1/342 (0%)
741 Frame = +2 741 Frame = +2
742 742
743 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 743 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
744 MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLY 744 MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLY
745 Sbjct 23 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLY 202 745 Sbjct 23 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLY 202