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1 #This is a sample file distributed with Galaxy that is used to define a
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2 #list of protein BLAST databases, using three columns tab separated
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3 #(longer whitespace are TAB characters):
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4 #
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5 #<unique_id> <database_caption> <base_name_path>
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6 #
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7 #The captions typically contain spaces and might end with the build date.
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8 #It is important that the actual database name does not have a space in
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9 #it, and that there are only two tabs on each line.
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10 #
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11 #So, for example, if your database is NR and the path to your base name
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12 #is /data/blastdb/nr, then the blastdb_p.loc entry would look like this:
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13 #
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14 #nr{tab}NCBI NR (non redundant){tab}/data/blastdb/nr
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15 #
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16 #and your /data/blastdb directory would contain all of the files associated
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17 #with the database, /data/blastdb/nr.*.
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18 #
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19 #Your blastdb_p.loc file should include an entry per line for each "base name"
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20 #you have stored. For example:
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21 #
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22 #nr_05Jun2010 NCBI NR (non redundant) 05 Jun 2010 /data/blastdb/05Jun2010/nr
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23 #nr_15Aug2010 NCBI NR (non redundant) 15 Aug 2010 /data/blastdb/15Aug2010/nr
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24 #...etc...
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25 #
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26 #You can download the NCBI provided protein databases like NR from here:
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27 #ftp://ftp.ncbi.nlm.nih.gov/blast/db/
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28 #
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29 #See also blastdb.loc which is for any nucleotide BLAST database, and
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30 #blastdb_d.loc which is for any protein domains databases (like CDD).
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