Mercurial > repos > peterjc > ncbi_blast_plus
annotate test-data/blastx_rhodopsin_vs_four_human.xml @ 46:148eceb80cbb draft
Uploaded v0.1.01, preview 1, adds makeprofiledb etc
| author | peterjc |
|---|---|
| date | Wed, 19 Mar 2014 10:51:45 -0400 |
| parents | 2f7fac29bb3c |
| children | b19b6addd05c |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 3 | 2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> |
| 0 | 3 <BlastOutput> |
| 4 <BlastOutput_program>blastx</BlastOutput_program> | |
|
38
2f7fac29bb3c
Uploaded v0.1.00 preview 1, updated to wrap BLAST+ 2.2.29
peterjc
parents:
33
diff
changeset
|
5 <BlastOutput_version>BLASTX 2.2.29+</BlastOutput_version> |
| 0 | 6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> |
| 7 <BlastOutput_db></BlastOutput_db> | |
| 8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> | |
| 9 <BlastOutput_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</BlastOutput_query-def> | |
| 10 <BlastOutput_query-len>1047</BlastOutput_query-len> | |
| 11 <BlastOutput_param> | |
| 12 <Parameters> | |
| 13 <Parameters_matrix>BLOSUM62</Parameters_matrix> | |
| 14 <Parameters_expect>1e-10</Parameters_expect> | |
| 15 <Parameters_gap-open>11</Parameters_gap-open> | |
| 16 <Parameters_gap-extend>1</Parameters_gap-extend> | |
| 17 <Parameters_filter>L;</Parameters_filter> | |
| 18 </Parameters> | |
| 19 </BlastOutput_param> | |
| 33 | 20 <BlastOutput_iterations> |
| 21 <Iteration> | |
| 22 <Iteration_iter-num>1</Iteration_iter-num> | |
| 23 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
| 24 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> | |
| 25 <Iteration_query-len>1047</Iteration_query-len> | |
| 26 <Iteration_hits> | |
| 27 </Iteration_hits> | |
| 28 <Iteration_stat> | |
| 29 <Statistics> | |
| 30 <Statistics_db-num>0</Statistics_db-num> | |
| 31 <Statistics_db-len>0</Statistics_db-len> | |
| 32 <Statistics_hsp-len>30</Statistics_hsp-len> | |
| 33 <Statistics_eff-space>119944</Statistics_eff-space> | |
| 34 <Statistics_kappa>0.041</Statistics_kappa> | |
| 35 <Statistics_lambda>0.267</Statistics_lambda> | |
| 36 <Statistics_entropy>0.14</Statistics_entropy> | |
| 37 </Statistics> | |
| 38 </Iteration_stat> | |
| 39 <Iteration_message>No hits found</Iteration_message> | |
| 40 </Iteration> | |
| 41 <Iteration> | |
| 42 <Iteration_iter-num>2</Iteration_iter-num> | |
| 43 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
| 44 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> | |
| 45 <Iteration_query-len>1047</Iteration_query-len> | |
| 46 <Iteration_hits> | |
| 47 </Iteration_hits> | |
| 48 <Iteration_stat> | |
| 49 <Statistics> | |
| 50 <Statistics_db-num>0</Statistics_db-num> | |
| 51 <Statistics_db-len>0</Statistics_db-len> | |
| 52 <Statistics_hsp-len>30</Statistics_hsp-len> | |
| 53 <Statistics_eff-space>119944</Statistics_eff-space> | |
| 54 <Statistics_kappa>0.041</Statistics_kappa> | |
| 55 <Statistics_lambda>0.267</Statistics_lambda> | |
| 56 <Statistics_entropy>0.14</Statistics_entropy> | |
| 57 </Statistics> | |
| 58 </Iteration_stat> | |
| 59 <Iteration_message>No hits found</Iteration_message> | |
| 60 </Iteration> | |
| 61 <Iteration> | |
| 62 <Iteration_iter-num>3</Iteration_iter-num> | |
| 63 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
| 64 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> | |
| 65 <Iteration_query-len>1047</Iteration_query-len> | |
| 66 <Iteration_hits> | |
| 67 </Iteration_hits> | |
| 68 <Iteration_stat> | |
| 69 <Statistics> | |
| 70 <Statistics_db-num>0</Statistics_db-num> | |
| 71 <Statistics_db-len>0</Statistics_db-len> | |
| 72 <Statistics_hsp-len>30</Statistics_hsp-len> | |
| 73 <Statistics_eff-space>119944</Statistics_eff-space> | |
| 74 <Statistics_kappa>0.041</Statistics_kappa> | |
| 75 <Statistics_lambda>0.267</Statistics_lambda> | |
| 76 <Statistics_entropy>0.14</Statistics_entropy> | |
| 77 </Statistics> | |
| 78 </Iteration_stat> | |
| 79 <Iteration_message>No hits found</Iteration_message> | |
| 80 </Iteration> | |
| 81 <Iteration> | |
| 82 <Iteration_iter-num>4</Iteration_iter-num> | |
| 83 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
| 84 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> | |
| 85 <Iteration_query-len>1047</Iteration_query-len> | |
| 86 <Iteration_hits> | |
| 87 <Hit> | |
| 88 <Hit_num>1</Hit_num> | |
| 89 <Hit_id>Subject_4</Hit_id> | |
| 90 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> | |
| 91 <Hit_accession>Subject_4</Hit_accession> | |
| 92 <Hit_len>348</Hit_len> | |
| 93 <Hit_hsps> | |
| 94 <Hsp> | |
| 95 <Hsp_num>1</Hsp_num> | |
| 96 <Hsp_bit-score>639.032</Hsp_bit-score> | |
| 97 <Hsp_score>1647</Hsp_score> | |
| 98 <Hsp_evalue>0</Hsp_evalue> | |
| 99 <Hsp_query-from>1</Hsp_query-from> | |
| 100 <Hsp_query-to>1044</Hsp_query-to> | |
| 101 <Hsp_hit-from>1</Hsp_hit-from> | |
| 102 <Hsp_hit-to>348</Hsp_hit-to> | |
| 103 <Hsp_query-frame>1</Hsp_query-frame> | |
| 104 <Hsp_hit-frame>0</Hsp_hit-frame> | |
| 105 <Hsp_identity>336</Hsp_identity> | |
| 106 <Hsp_positive>343</Hsp_positive> | |
| 107 <Hsp_gaps>0</Hsp_gaps> | |
| 108 <Hsp_align-len>348</Hsp_align-len> | |
| 109 <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_qseq> | |
| 110 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq> | |
| 111 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline> | |
| 112 </Hsp> | |
| 113 </Hit_hsps> | |
| 114 </Hit> | |
| 115 </Iteration_hits> | |
| 116 <Iteration_stat> | |
| 117 <Statistics> | |
| 118 <Statistics_db-num>0</Statistics_db-num> | |
| 119 <Statistics_db-len>0</Statistics_db-len> | |
| 120 <Statistics_hsp-len>30</Statistics_hsp-len> | |
| 121 <Statistics_eff-space>119944</Statistics_eff-space> | |
| 122 <Statistics_kappa>0.041</Statistics_kappa> | |
| 123 <Statistics_lambda>0.267</Statistics_lambda> | |
| 124 <Statistics_entropy>0.14</Statistics_entropy> | |
| 125 </Statistics> | |
| 126 </Iteration_stat> | |
| 127 </Iteration> | |
| 128 <Iteration> | |
| 129 <Iteration_iter-num>5</Iteration_iter-num> | |
| 130 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
| 131 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> | |
| 132 <Iteration_query-len>1574</Iteration_query-len> | |
| 133 <Iteration_hits> | |
| 134 </Iteration_hits> | |
| 135 <Iteration_stat> | |
| 136 <Statistics> | |
| 137 <Statistics_db-num>0</Statistics_db-num> | |
| 138 <Statistics_db-len>0</Statistics_db-len> | |
| 139 <Statistics_hsp-len>33</Statistics_hsp-len> | |
| 140 <Statistics_eff-space>183143</Statistics_eff-space> | |
| 141 <Statistics_kappa>0.041</Statistics_kappa> | |
| 142 <Statistics_lambda>0.267</Statistics_lambda> | |
| 143 <Statistics_entropy>0.14</Statistics_entropy> | |
| 144 </Statistics> | |
| 145 </Iteration_stat> | |
| 146 <Iteration_message>No hits found</Iteration_message> | |
| 147 </Iteration> | |
| 148 <Iteration> | |
| 149 <Iteration_iter-num>6</Iteration_iter-num> | |
| 150 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
| 151 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> | |
| 152 <Iteration_query-len>1574</Iteration_query-len> | |
| 153 <Iteration_hits> | |
| 154 </Iteration_hits> | |
| 155 <Iteration_stat> | |
| 156 <Statistics> | |
| 157 <Statistics_db-num>0</Statistics_db-num> | |
| 158 <Statistics_db-len>0</Statistics_db-len> | |
| 159 <Statistics_hsp-len>33</Statistics_hsp-len> | |
| 160 <Statistics_eff-space>183143</Statistics_eff-space> | |
| 161 <Statistics_kappa>0.041</Statistics_kappa> | |
| 162 <Statistics_lambda>0.267</Statistics_lambda> | |
| 163 <Statistics_entropy>0.14</Statistics_entropy> | |
| 164 </Statistics> | |
| 165 </Iteration_stat> | |
| 166 <Iteration_message>No hits found</Iteration_message> | |
| 167 </Iteration> | |
| 168 <Iteration> | |
| 169 <Iteration_iter-num>7</Iteration_iter-num> | |
| 170 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
| 171 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> | |
| 172 <Iteration_query-len>1574</Iteration_query-len> | |
| 173 <Iteration_hits> | |
| 174 </Iteration_hits> | |
| 175 <Iteration_stat> | |
| 176 <Statistics> | |
| 177 <Statistics_db-num>0</Statistics_db-num> | |
| 178 <Statistics_db-len>0</Statistics_db-len> | |
| 179 <Statistics_hsp-len>33</Statistics_hsp-len> | |
| 180 <Statistics_eff-space>183143</Statistics_eff-space> | |
| 181 <Statistics_kappa>0.041</Statistics_kappa> | |
| 182 <Statistics_lambda>0.267</Statistics_lambda> | |
| 183 <Statistics_entropy>0.14</Statistics_entropy> | |
| 184 </Statistics> | |
| 185 </Iteration_stat> | |
| 186 <Iteration_message>No hits found</Iteration_message> | |
| 187 </Iteration> | |
| 188 <Iteration> | |
| 189 <Iteration_iter-num>8</Iteration_iter-num> | |
| 190 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
| 191 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> | |
| 192 <Iteration_query-len>1574</Iteration_query-len> | |
| 193 <Iteration_hits> | |
| 194 <Hit> | |
| 195 <Hit_num>1</Hit_num> | |
| 196 <Hit_id>Subject_4</Hit_id> | |
| 197 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> | |
| 198 <Hit_accession>Subject_4</Hit_accession> | |
| 199 <Hit_len>348</Hit_len> | |
| 200 <Hit_hsps> | |
| 201 <Hsp> | |
| 202 <Hsp_num>1</Hsp_num> | |
| 203 <Hsp_bit-score>551.206</Hsp_bit-score> | |
| 204 <Hsp_score>1419</Hsp_score> | |
| 205 <Hsp_evalue>0</Hsp_evalue> | |
| 206 <Hsp_query-from>42</Hsp_query-from> | |
| 207 <Hsp_query-to>1037</Hsp_query-to> | |
| 208 <Hsp_hit-from>1</Hsp_hit-from> | |
| 209 <Hsp_hit-to>332</Hsp_hit-to> | |
| 210 <Hsp_query-frame>3</Hsp_query-frame> | |
| 211 <Hsp_hit-frame>0</Hsp_hit-frame> | |
| 212 <Hsp_identity>283</Hsp_identity> | |
| 213 <Hsp_positive>315</Hsp_positive> | |
| 214 <Hsp_gaps>0</Hsp_gaps> | |
| 215 <Hsp_align-len>332</Hsp_align-len> | |
| 216 <Hsp_qseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD</Hsp_qseq> | |
| 217 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE</Hsp_hseq> | |
| 218 <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+</Hsp_midline> | |
| 219 </Hsp> | |
| 220 </Hit_hsps> | |
| 221 </Hit> | |
| 222 </Iteration_hits> | |
| 223 <Iteration_stat> | |
| 224 <Statistics> | |
| 225 <Statistics_db-num>0</Statistics_db-num> | |
| 226 <Statistics_db-len>0</Statistics_db-len> | |
| 227 <Statistics_hsp-len>33</Statistics_hsp-len> | |
| 228 <Statistics_eff-space>183143</Statistics_eff-space> | |
| 229 <Statistics_kappa>0.041</Statistics_kappa> | |
| 230 <Statistics_lambda>0.267</Statistics_lambda> | |
| 231 <Statistics_entropy>0.14</Statistics_entropy> | |
| 232 </Statistics> | |
| 233 </Iteration_stat> | |
| 234 </Iteration> | |
| 235 <Iteration> | |
| 236 <Iteration_iter-num>9</Iteration_iter-num> | |
| 237 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
| 238 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> | |
| 239 <Iteration_query-len>4301</Iteration_query-len> | |
| 240 <Iteration_hits> | |
| 241 </Iteration_hits> | |
| 242 <Iteration_stat> | |
| 243 <Statistics> | |
| 244 <Statistics_db-num>0</Statistics_db-num> | |
| 245 <Statistics_db-len>0</Statistics_db-len> | |
| 246 <Statistics_hsp-len>40</Statistics_hsp-len> | |
| 247 <Statistics_eff-space>509838</Statistics_eff-space> | |
| 248 <Statistics_kappa>0.041</Statistics_kappa> | |
| 249 <Statistics_lambda>0.267</Statistics_lambda> | |
| 250 <Statistics_entropy>0.14</Statistics_entropy> | |
| 251 </Statistics> | |
| 252 </Iteration_stat> | |
| 253 <Iteration_message>No hits found</Iteration_message> | |
| 254 </Iteration> | |
| 255 <Iteration> | |
| 256 <Iteration_iter-num>10</Iteration_iter-num> | |
| 257 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
| 258 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> | |
| 259 <Iteration_query-len>4301</Iteration_query-len> | |
| 260 <Iteration_hits> | |
| 261 </Iteration_hits> | |
| 262 <Iteration_stat> | |
| 263 <Statistics> | |
| 264 <Statistics_db-num>0</Statistics_db-num> | |
| 265 <Statistics_db-len>0</Statistics_db-len> | |
| 266 <Statistics_hsp-len>40</Statistics_hsp-len> | |
| 267 <Statistics_eff-space>509838</Statistics_eff-space> | |
| 268 <Statistics_kappa>0.041</Statistics_kappa> | |
| 269 <Statistics_lambda>0.267</Statistics_lambda> | |
| 270 <Statistics_entropy>0.14</Statistics_entropy> | |
| 271 </Statistics> | |
| 272 </Iteration_stat> | |
| 273 <Iteration_message>No hits found</Iteration_message> | |
| 274 </Iteration> | |
| 275 <Iteration> | |
| 276 <Iteration_iter-num>11</Iteration_iter-num> | |
| 277 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
| 278 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> | |
| 279 <Iteration_query-len>4301</Iteration_query-len> | |
| 280 <Iteration_hits> | |
| 281 </Iteration_hits> | |
| 282 <Iteration_stat> | |
| 283 <Statistics> | |
| 284 <Statistics_db-num>0</Statistics_db-num> | |
| 285 <Statistics_db-len>0</Statistics_db-len> | |
| 286 <Statistics_hsp-len>40</Statistics_hsp-len> | |
| 287 <Statistics_eff-space>509838</Statistics_eff-space> | |
| 288 <Statistics_kappa>0.041</Statistics_kappa> | |
| 289 <Statistics_lambda>0.267</Statistics_lambda> | |
| 290 <Statistics_entropy>0.14</Statistics_entropy> | |
| 291 </Statistics> | |
| 292 </Iteration_stat> | |
| 293 <Iteration_message>No hits found</Iteration_message> | |
| 294 </Iteration> | |
| 295 <Iteration> | |
| 296 <Iteration_iter-num>12</Iteration_iter-num> | |
| 297 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
| 298 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> | |
| 299 <Iteration_query-len>4301</Iteration_query-len> | |
| 300 <Iteration_hits> | |
| 301 <Hit> | |
| 302 <Hit_num>1</Hit_num> | |
| 303 <Hit_id>Subject_4</Hit_id> | |
| 304 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> | |
| 305 <Hit_accession>Subject_4</Hit_accession> | |
| 306 <Hit_len>348</Hit_len> | |
| 307 <Hit_hsps> | |
| 308 <Hsp> | |
| 309 <Hsp_num>1</Hsp_num> | |
|
38
2f7fac29bb3c
Uploaded v0.1.00 preview 1, updated to wrap BLAST+ 2.2.29
peterjc
parents:
33
diff
changeset
|
310 <Hsp_bit-score>220.705</Hsp_bit-score> |
|
2f7fac29bb3c
Uploaded v0.1.00 preview 1, updated to wrap BLAST+ 2.2.29
peterjc
parents:
33
diff
changeset
|
311 <Hsp_score>561</Hsp_score> |
|
2f7fac29bb3c
Uploaded v0.1.00 preview 1, updated to wrap BLAST+ 2.2.29
peterjc
parents:
33
diff
changeset
|
312 <Hsp_evalue>3.21377e-67</Hsp_evalue> |
| 33 | 313 <Hsp_query-from>1</Hsp_query-from> |
| 314 <Hsp_query-to>333</Hsp_query-to> | |
| 315 <Hsp_hit-from>11</Hsp_hit-from> | |
| 316 <Hsp_hit-to>121</Hsp_hit-to> | |
| 317 <Hsp_query-frame>1</Hsp_query-frame> | |
| 318 <Hsp_hit-frame>0</Hsp_hit-frame> | |
| 319 <Hsp_identity>107</Hsp_identity> | |
| 320 <Hsp_positive>109</Hsp_positive> | |
| 321 <Hsp_gaps>0</Hsp_gaps> | |
| 322 <Hsp_align-len>111</Hsp_align-len> | |
| 323 <Hsp_qseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq> | |
| 324 <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq> | |
| 325 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline> | |
| 326 </Hsp> | |
| 327 <Hsp> | |
| 328 <Hsp_num>2</Hsp_num> | |
| 329 <Hsp_bit-score>127.487</Hsp_bit-score> | |
| 330 <Hsp_score>319</Hsp_score> | |
| 331 <Hsp_evalue>1.95079e-35</Hsp_evalue> | |
| 332 <Hsp_query-from>3174</Hsp_query-from> | |
| 333 <Hsp_query-to>3368</Hsp_query-to> | |
| 334 <Hsp_hit-from>248</Hsp_hit-from> | |
| 335 <Hsp_hit-to>312</Hsp_hit-to> | |
| 336 <Hsp_query-frame>3</Hsp_query-frame> | |
| 337 <Hsp_hit-frame>0</Hsp_hit-frame> | |
| 338 <Hsp_identity>60</Hsp_identity> | |
| 339 <Hsp_positive>64</Hsp_positive> | |
| 340 <Hsp_gaps>0</Hsp_gaps> | |
| 341 <Hsp_align-len>65</Hsp_align-len> | |
| 342 <Hsp_qseq>KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_qseq> | |
| 343 <Hsp_hseq>KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_hseq> | |
| 344 <Hsp_midline>KEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> | |
| 345 </Hsp> | |
| 346 <Hsp> | |
| 347 <Hsp_num>3</Hsp_num> | |
|
38
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348 <Hsp_bit-score>121.709</Hsp_bit-score> |
|
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349 <Hsp_score>304</Hsp_score> |
|
2f7fac29bb3c
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|
350 <Hsp_evalue>1.62516e-33</Hsp_evalue> |
| 33 | 351 <Hsp_query-from>2855</Hsp_query-from> |
| 352 <Hsp_query-to>3031</Hsp_query-to> | |
| 353 <Hsp_hit-from>177</Hsp_hit-from> | |
| 354 <Hsp_hit-to>235</Hsp_hit-to> | |
| 355 <Hsp_query-frame>2</Hsp_query-frame> | |
| 356 <Hsp_hit-frame>0</Hsp_hit-frame> | |
| 357 <Hsp_identity>54</Hsp_identity> | |
| 358 <Hsp_positive>57</Hsp_positive> | |
| 359 <Hsp_gaps>0</Hsp_gaps> | |
| 360 <Hsp_align-len>59</Hsp_align-len> | |
| 361 <Hsp_qseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_qseq> | |
| 362 <Hsp_hseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA</Hsp_hseq> | |
| 363 <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +</Hsp_midline> | |
| 364 </Hsp> | |
| 365 <Hsp> | |
| 366 <Hsp_num>4</Hsp_num> | |
| 367 <Hsp_bit-score>97.0561</Hsp_bit-score> | |
| 368 <Hsp_score>240</Hsp_score> | |
| 369 <Hsp_evalue>1.16473e-25</Hsp_evalue> | |
| 370 <Hsp_query-from>1404</Hsp_query-from> | |
| 371 <Hsp_query-to>1580</Hsp_query-to> | |
| 372 <Hsp_hit-from>119</Hsp_hit-from> | |
| 373 <Hsp_hit-to>177</Hsp_hit-to> | |
| 374 <Hsp_query-frame>3</Hsp_query-frame> | |
| 375 <Hsp_hit-frame>0</Hsp_hit-frame> | |
| 376 <Hsp_identity>55</Hsp_identity> | |
| 377 <Hsp_positive>56</Hsp_positive> | |
| 378 <Hsp_gaps>0</Hsp_gaps> | |
| 379 <Hsp_align-len>59</Hsp_align-len> | |
| 380 <Hsp_qseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_qseq> | |
| 381 <Hsp_hseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_hseq> | |
| 382 <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline> | |
| 383 </Hsp> | |
| 384 <Hsp> | |
| 385 <Hsp_num>5</Hsp_num> | |
| 386 <Hsp_bit-score>56.9954</Hsp_bit-score> | |
| 387 <Hsp_score>136</Hsp_score> | |
| 388 <Hsp_evalue>1.23645e-12</Hsp_evalue> | |
| 389 <Hsp_query-from>4222</Hsp_query-from> | |
| 390 <Hsp_query-to>4299</Hsp_query-to> | |
| 391 <Hsp_hit-from>312</Hsp_hit-from> | |
| 392 <Hsp_hit-to>337</Hsp_hit-to> | |
| 393 <Hsp_query-frame>1</Hsp_query-frame> | |
| 394 <Hsp_hit-frame>0</Hsp_hit-frame> | |
| 395 <Hsp_identity>23</Hsp_identity> | |
| 396 <Hsp_positive>24</Hsp_positive> | |
| 397 <Hsp_gaps>0</Hsp_gaps> | |
| 398 <Hsp_align-len>26</Hsp_align-len> | |
| 399 <Hsp_qseq>QFRNCMLTTLCCGKNPLGDDEASTTA</Hsp_qseq> | |
| 400 <Hsp_hseq>QFRNCMLTTICCGKNPLGDDEASATV</Hsp_hseq> | |
| 401 <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T </Hsp_midline> | |
| 402 </Hsp> | |
| 403 </Hit_hsps> | |
| 404 </Hit> | |
| 405 </Iteration_hits> | |
| 406 <Iteration_stat> | |
| 407 <Statistics> | |
| 408 <Statistics_db-num>0</Statistics_db-num> | |
| 409 <Statistics_db-len>0</Statistics_db-len> | |
| 410 <Statistics_hsp-len>40</Statistics_hsp-len> | |
| 411 <Statistics_eff-space>509838</Statistics_eff-space> | |
| 412 <Statistics_kappa>0.041</Statistics_kappa> | |
| 413 <Statistics_lambda>0.267</Statistics_lambda> | |
| 414 <Statistics_entropy>0.14</Statistics_entropy> | |
| 415 </Statistics> | |
| 416 </Iteration_stat> | |
| 417 </Iteration> | |
| 418 <Iteration> | |
| 419 <Iteration_iter-num>13</Iteration_iter-num> | |
| 420 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
| 421 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> | |
| 422 <Iteration_query-len>983</Iteration_query-len> | |
| 423 <Iteration_hits> | |
| 424 </Iteration_hits> | |
| 425 <Iteration_stat> | |
| 426 <Statistics> | |
| 427 <Statistics_db-num>0</Statistics_db-num> | |
| 428 <Statistics_db-len>0</Statistics_db-len> | |
| 429 <Statistics_hsp-len>29</Statistics_hsp-len> | |
| 430 <Statistics_eff-space>112346</Statistics_eff-space> | |
| 431 <Statistics_kappa>0.041</Statistics_kappa> | |
| 432 <Statistics_lambda>0.267</Statistics_lambda> | |
| 433 <Statistics_entropy>0.14</Statistics_entropy> | |
| 434 </Statistics> | |
| 435 </Iteration_stat> | |
| 436 <Iteration_message>No hits found</Iteration_message> | |
| 437 </Iteration> | |
| 438 <Iteration> | |
| 439 <Iteration_iter-num>14</Iteration_iter-num> | |
| 440 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
| 441 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> | |
| 442 <Iteration_query-len>983</Iteration_query-len> | |
| 443 <Iteration_hits> | |
| 444 </Iteration_hits> | |
| 445 <Iteration_stat> | |
| 446 <Statistics> | |
| 447 <Statistics_db-num>0</Statistics_db-num> | |
| 448 <Statistics_db-len>0</Statistics_db-len> | |
| 449 <Statistics_hsp-len>29</Statistics_hsp-len> | |
| 450 <Statistics_eff-space>112346</Statistics_eff-space> | |
| 451 <Statistics_kappa>0.041</Statistics_kappa> | |
| 452 <Statistics_lambda>0.267</Statistics_lambda> | |
| 453 <Statistics_entropy>0.14</Statistics_entropy> | |
| 454 </Statistics> | |
| 455 </Iteration_stat> | |
| 456 <Iteration_message>No hits found</Iteration_message> | |
| 457 </Iteration> | |
| 458 <Iteration> | |
| 459 <Iteration_iter-num>15</Iteration_iter-num> | |
| 460 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
| 461 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> | |
| 462 <Iteration_query-len>983</Iteration_query-len> | |
| 463 <Iteration_hits> | |
| 464 </Iteration_hits> | |
| 465 <Iteration_stat> | |
| 466 <Statistics> | |
| 467 <Statistics_db-num>0</Statistics_db-num> | |
| 468 <Statistics_db-len>0</Statistics_db-len> | |
| 469 <Statistics_hsp-len>29</Statistics_hsp-len> | |
| 470 <Statistics_eff-space>112346</Statistics_eff-space> | |
| 471 <Statistics_kappa>0.041</Statistics_kappa> | |
| 472 <Statistics_lambda>0.267</Statistics_lambda> | |
| 473 <Statistics_entropy>0.14</Statistics_entropy> | |
| 474 </Statistics> | |
| 475 </Iteration_stat> | |
| 476 <Iteration_message>No hits found</Iteration_message> | |
| 477 </Iteration> | |
| 478 <Iteration> | |
| 479 <Iteration_iter-num>16</Iteration_iter-num> | |
| 480 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
| 481 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> | |
| 482 <Iteration_query-len>983</Iteration_query-len> | |
| 483 <Iteration_hits> | |
| 484 <Hit> | |
| 485 <Hit_num>1</Hit_num> | |
| 486 <Hit_id>Subject_4</Hit_id> | |
| 487 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> | |
| 488 <Hit_accession>Subject_4</Hit_accession> | |
| 489 <Hit_len>348</Hit_len> | |
| 490 <Hit_hsps> | |
| 491 <Hsp> | |
| 492 <Hsp_num>1</Hsp_num> | |
| 493 <Hsp_bit-score>589.341</Hsp_bit-score> | |
| 494 <Hsp_score>1518</Hsp_score> | |
| 495 <Hsp_evalue>0</Hsp_evalue> | |
| 496 <Hsp_query-from>1</Hsp_query-from> | |
| 497 <Hsp_query-to>978</Hsp_query-to> | |
| 498 <Hsp_hit-from>11</Hsp_hit-from> | |
| 499 <Hsp_hit-to>336</Hsp_hit-to> | |
| 500 <Hsp_query-frame>1</Hsp_query-frame> | |
| 501 <Hsp_hit-frame>0</Hsp_hit-frame> | |
| 502 <Hsp_identity>310</Hsp_identity> | |
| 503 <Hsp_positive>322</Hsp_positive> | |
| 504 <Hsp_gaps>0</Hsp_gaps> | |
| 505 <Hsp_align-len>326</Hsp_align-len> | |
| 506 <Hsp_qseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_qseq> | |
| 507 <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_hseq> | |
| 508 <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline> | |
| 509 </Hsp> | |
| 510 </Hit_hsps> | |
| 511 </Hit> | |
| 512 </Iteration_hits> | |
| 513 <Iteration_stat> | |
| 514 <Statistics> | |
| 515 <Statistics_db-num>0</Statistics_db-num> | |
| 516 <Statistics_db-len>0</Statistics_db-len> | |
| 517 <Statistics_hsp-len>29</Statistics_hsp-len> | |
| 518 <Statistics_eff-space>112346</Statistics_eff-space> | |
| 519 <Statistics_kappa>0.041</Statistics_kappa> | |
| 520 <Statistics_lambda>0.267</Statistics_lambda> | |
| 521 <Statistics_entropy>0.14</Statistics_entropy> | |
| 522 </Statistics> | |
| 523 </Iteration_stat> | |
| 524 </Iteration> | |
| 525 <Iteration> | |
| 526 <Iteration_iter-num>17</Iteration_iter-num> | |
| 527 <Iteration_query-ID>Query_5</Iteration_query-ID> | |
| 528 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> | |
| 529 <Iteration_query-len>1047</Iteration_query-len> | |
| 530 <Iteration_hits> | |
| 531 </Iteration_hits> | |
| 532 <Iteration_stat> | |
| 533 <Statistics> | |
| 534 <Statistics_db-num>0</Statistics_db-num> | |
| 535 <Statistics_db-len>0</Statistics_db-len> | |
| 536 <Statistics_hsp-len>30</Statistics_hsp-len> | |
| 537 <Statistics_eff-space>119944</Statistics_eff-space> | |
| 538 <Statistics_kappa>0.041</Statistics_kappa> | |
| 539 <Statistics_lambda>0.267</Statistics_lambda> | |
| 540 <Statistics_entropy>0.14</Statistics_entropy> | |
| 541 </Statistics> | |
| 542 </Iteration_stat> | |
| 543 <Iteration_message>No hits found</Iteration_message> | |
| 544 </Iteration> | |
| 545 <Iteration> | |
| 546 <Iteration_iter-num>18</Iteration_iter-num> | |
| 547 <Iteration_query-ID>Query_5</Iteration_query-ID> | |
| 548 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> | |
| 549 <Iteration_query-len>1047</Iteration_query-len> | |
| 550 <Iteration_hits> | |
| 551 </Iteration_hits> | |
| 552 <Iteration_stat> | |
| 553 <Statistics> | |
| 554 <Statistics_db-num>0</Statistics_db-num> | |
| 555 <Statistics_db-len>0</Statistics_db-len> | |
| 556 <Statistics_hsp-len>30</Statistics_hsp-len> | |
| 557 <Statistics_eff-space>119944</Statistics_eff-space> | |
| 558 <Statistics_kappa>0.041</Statistics_kappa> | |
| 559 <Statistics_lambda>0.267</Statistics_lambda> | |
| 560 <Statistics_entropy>0.14</Statistics_entropy> | |
| 561 </Statistics> | |
| 562 </Iteration_stat> | |
| 563 <Iteration_message>No hits found</Iteration_message> | |
| 564 </Iteration> | |
| 565 <Iteration> | |
| 566 <Iteration_iter-num>19</Iteration_iter-num> | |
| 567 <Iteration_query-ID>Query_5</Iteration_query-ID> | |
| 568 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> | |
| 569 <Iteration_query-len>1047</Iteration_query-len> | |
| 570 <Iteration_hits> | |
| 571 </Iteration_hits> | |
| 572 <Iteration_stat> | |
| 573 <Statistics> | |
| 574 <Statistics_db-num>0</Statistics_db-num> | |
| 575 <Statistics_db-len>0</Statistics_db-len> | |
| 576 <Statistics_hsp-len>30</Statistics_hsp-len> | |
| 577 <Statistics_eff-space>119944</Statistics_eff-space> | |
| 578 <Statistics_kappa>0.041</Statistics_kappa> | |
| 579 <Statistics_lambda>0.267</Statistics_lambda> | |
| 580 <Statistics_entropy>0.14</Statistics_entropy> | |
| 581 </Statistics> | |
| 582 </Iteration_stat> | |
| 583 <Iteration_message>No hits found</Iteration_message> | |
| 584 </Iteration> | |
| 585 <Iteration> | |
| 586 <Iteration_iter-num>20</Iteration_iter-num> | |
| 587 <Iteration_query-ID>Query_5</Iteration_query-ID> | |
| 588 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> | |
| 589 <Iteration_query-len>1047</Iteration_query-len> | |
| 590 <Iteration_hits> | |
| 591 <Hit> | |
| 592 <Hit_num>1</Hit_num> | |
| 593 <Hit_id>Subject_4</Hit_id> | |
| 594 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> | |
| 595 <Hit_accession>Subject_4</Hit_accession> | |
| 596 <Hit_len>348</Hit_len> | |
| 597 <Hit_hsps> | |
| 598 <Hsp> | |
| 599 <Hsp_num>1</Hsp_num> | |
| 600 <Hsp_bit-score>619.387</Hsp_bit-score> | |
| 601 <Hsp_score>1596</Hsp_score> | |
| 602 <Hsp_evalue>0</Hsp_evalue> | |
| 603 <Hsp_query-from>1</Hsp_query-from> | |
| 604 <Hsp_query-to>1044</Hsp_query-to> | |
| 605 <Hsp_hit-from>1</Hsp_hit-from> | |
| 606 <Hsp_hit-to>348</Hsp_hit-to> | |
| 607 <Hsp_query-frame>1</Hsp_query-frame> | |
| 608 <Hsp_hit-frame>0</Hsp_hit-frame> | |
| 609 <Hsp_identity>325</Hsp_identity> | |
| 610 <Hsp_positive>337</Hsp_positive> | |
| 611 <Hsp_gaps>0</Hsp_gaps> | |
| 612 <Hsp_align-len>348</Hsp_align-len> | |
| 613 <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_qseq> | |
| 614 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq> | |
| 615 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline> | |
| 616 </Hsp> | |
| 617 </Hit_hsps> | |
| 618 </Hit> | |
| 619 </Iteration_hits> | |
| 620 <Iteration_stat> | |
| 621 <Statistics> | |
| 622 <Statistics_db-num>0</Statistics_db-num> | |
| 623 <Statistics_db-len>0</Statistics_db-len> | |
| 624 <Statistics_hsp-len>30</Statistics_hsp-len> | |
| 625 <Statistics_eff-space>119944</Statistics_eff-space> | |
| 626 <Statistics_kappa>0.041</Statistics_kappa> | |
| 627 <Statistics_lambda>0.267</Statistics_lambda> | |
| 628 <Statistics_entropy>0.14</Statistics_entropy> | |
| 629 </Statistics> | |
| 630 </Iteration_stat> | |
| 631 </Iteration> | |
| 632 <Iteration> | |
| 633 <Iteration_iter-num>21</Iteration_iter-num> | |
| 634 <Iteration_query-ID>Query_6</Iteration_query-ID> | |
| 635 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> | |
| 636 <Iteration_query-len>1344</Iteration_query-len> | |
| 637 <Iteration_hits> | |
| 638 </Iteration_hits> | |
| 639 <Iteration_stat> | |
| 640 <Statistics> | |
| 641 <Statistics_db-num>0</Statistics_db-num> | |
| 642 <Statistics_db-len>0</Statistics_db-len> | |
| 643 <Statistics_hsp-len>32</Statistics_hsp-len> | |
| 644 <Statistics_eff-space>155584</Statistics_eff-space> | |
| 645 <Statistics_kappa>0.041</Statistics_kappa> | |
| 646 <Statistics_lambda>0.267</Statistics_lambda> | |
| 647 <Statistics_entropy>0.14</Statistics_entropy> | |
| 648 </Statistics> | |
| 649 </Iteration_stat> | |
| 650 <Iteration_message>No hits found</Iteration_message> | |
| 651 </Iteration> | |
| 652 <Iteration> | |
| 653 <Iteration_iter-num>22</Iteration_iter-num> | |
| 654 <Iteration_query-ID>Query_6</Iteration_query-ID> | |
| 655 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> | |
| 656 <Iteration_query-len>1344</Iteration_query-len> | |
| 657 <Iteration_hits> | |
| 658 </Iteration_hits> | |
| 659 <Iteration_stat> | |
| 660 <Statistics> | |
| 661 <Statistics_db-num>0</Statistics_db-num> | |
| 662 <Statistics_db-len>0</Statistics_db-len> | |
| 663 <Statistics_hsp-len>32</Statistics_hsp-len> | |
| 664 <Statistics_eff-space>155584</Statistics_eff-space> | |
| 665 <Statistics_kappa>0.041</Statistics_kappa> | |
| 666 <Statistics_lambda>0.267</Statistics_lambda> | |
| 667 <Statistics_entropy>0.14</Statistics_entropy> | |
| 668 </Statistics> | |
| 669 </Iteration_stat> | |
| 670 <Iteration_message>No hits found</Iteration_message> | |
| 671 </Iteration> | |
| 672 <Iteration> | |
| 673 <Iteration_iter-num>23</Iteration_iter-num> | |
| 674 <Iteration_query-ID>Query_6</Iteration_query-ID> | |
| 675 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> | |
| 676 <Iteration_query-len>1344</Iteration_query-len> | |
| 677 <Iteration_hits> | |
| 678 </Iteration_hits> | |
| 679 <Iteration_stat> | |
| 680 <Statistics> | |
| 681 <Statistics_db-num>0</Statistics_db-num> | |
| 682 <Statistics_db-len>0</Statistics_db-len> | |
| 683 <Statistics_hsp-len>32</Statistics_hsp-len> | |
| 684 <Statistics_eff-space>155584</Statistics_eff-space> | |
| 685 <Statistics_kappa>0.041</Statistics_kappa> | |
| 686 <Statistics_lambda>0.267</Statistics_lambda> | |
| 687 <Statistics_entropy>0.14</Statistics_entropy> | |
| 688 </Statistics> | |
| 689 </Iteration_stat> | |
| 690 <Iteration_message>No hits found</Iteration_message> | |
| 691 </Iteration> | |
| 692 <Iteration> | |
| 693 <Iteration_iter-num>24</Iteration_iter-num> | |
| 694 <Iteration_query-ID>Query_6</Iteration_query-ID> | |
| 695 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> | |
| 696 <Iteration_query-len>1344</Iteration_query-len> | |
| 697 <Iteration_hits> | |
| 698 <Hit> | |
| 699 <Hit_num>1</Hit_num> | |
| 700 <Hit_id>Subject_4</Hit_id> | |
| 701 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> | |
| 702 <Hit_accession>Subject_4</Hit_accession> | |
| 703 <Hit_len>348</Hit_len> | |
| 704 <Hit_hsps> | |
| 705 <Hsp> | |
| 706 <Hsp_num>1</Hsp_num> | |
| 707 <Hsp_bit-score>532.717</Hsp_bit-score> | |
| 708 <Hsp_score>1371</Hsp_score> | |
| 709 <Hsp_evalue>0</Hsp_evalue> | |
| 710 <Hsp_query-from>23</Hsp_query-from> | |
| 711 <Hsp_query-to>1021</Hsp_query-to> | |
| 712 <Hsp_hit-from>1</Hsp_hit-from> | |
| 713 <Hsp_hit-to>333</Hsp_hit-to> | |
| 714 <Hsp_query-frame>2</Hsp_query-frame> | |
| 715 <Hsp_hit-frame>0</Hsp_hit-frame> | |
| 716 <Hsp_identity>272</Hsp_identity> | |
| 717 <Hsp_positive>307</Hsp_positive> | |
| 718 <Hsp_gaps>0</Hsp_gaps> | |
| 719 <Hsp_align-len>333</Hsp_align-len> | |
| 720 <Hsp_qseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKXXXXXXXXXXXXXXXXXXVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG</Hsp_qseq> | |
| 721 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA</Hsp_hseq> | |
| 722 <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE+HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA+YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR+CM+TT+CCGKNP +++ </Hsp_midline> | |
| 723 </Hsp> | |
| 724 </Hit_hsps> | |
| 725 </Hit> | |
| 726 </Iteration_hits> | |
| 727 <Iteration_stat> | |
| 728 <Statistics> | |
| 729 <Statistics_db-num>0</Statistics_db-num> | |
| 730 <Statistics_db-len>0</Statistics_db-len> | |
| 731 <Statistics_hsp-len>32</Statistics_hsp-len> | |
| 732 <Statistics_eff-space>155584</Statistics_eff-space> | |
| 733 <Statistics_kappa>0.041</Statistics_kappa> | |
| 734 <Statistics_lambda>0.267</Statistics_lambda> | |
| 735 <Statistics_entropy>0.14</Statistics_entropy> | |
| 736 </Statistics> | |
| 737 </Iteration_stat> | |
| 738 </Iteration> | |
| 739 </BlastOutput_iterations> | |
| 740 </BlastOutput> | |
| 741 |