--- a/tools/sr_assembly/mira.txt	Tue Jun 07 15:47:17 2011 -0400
+++ b/tools/sr_assembly/mira.txt	Wed Apr 24 11:51:50 2013 -0400
@@ -7,7 +7,7 @@
 
 This tool is a short Python script (to collect the MIRA output and move it
 to where Galaxy expects the files, and convert MIRA's TCS file into a tab
-separate file for use in Galaxy). There are just two files to install:
+separated file for use in Galaxy). There are just two files to install:
 
 * mira.py (the Python script)
 * mira.xml (the Galaxy tool definition)
@@ -16,9 +16,9 @@
 modify the tools_conf.xml file to tell Galaxy to offer the tool and also do
 this to tools_conf.xml.sample in order to run any tests:
 
-<tool file="sr_assembly/seq_primer_clip.xml" />
+<tool file="sr_assembly/mira.xml" />
 
-You will also need to install MIRA, we used version 3.2.1. See:
+You will also need to install MIRA, we used version 3.4.0. See:
 
 http://chevreux.org/projects_mira.html
 http://sourceforge.net/projects/mira-assembler/
@@ -33,7 +33,17 @@
 History
 =======
 
-v0.0.1 - Initial version (working prototype)
+v0.0.1 - Initial version (working prototype, using MIRA 3.2.1)
+v0.0.2 - Improve capture of stdout/stderr (should see it as it runs)
+v0.0.3 - Support Ion Torrent reads, now requires MIRA 3.4.0 or later
+         (some other switches changed, e.g. -OUT rrol to rrot, which
+         means the wrapper no longer works with MIRA 3.2.x)
+       - The contig summary file (TCS file) was removed in MIRA 3.4
+       - Report all missing output files (not just first missing one)
+v0.0.4 - Fix problem with backbone arguments inroduced in v0.0.3
+v0.0.5 - Implement the <version_command> tag to record the wrapper
+         version and the MIRA version being used.
+       - Check using MIRA 3.4 (later versions have a different API)
 
 
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