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comparison tools/mira_3_4/mira.txt @ 7:e810e45bdad7 draft

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Uploaded v0.0.8, first attempt at unit test. Known to fail on local Galaxy install, suspected to be a test framework limitation.
author peterjc
date Tue, 30 Apr 2013 11:42:07 -0400
parents 03743667463c
children da604cc07658
comparison
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6:1e49ca6731cd 7:e810e45bdad7
59 version and the MIRA version being used. 59 version and the MIRA version being used.
60 - Check using MIRA 3.4 (later versions have a different API) 60 - Check using MIRA 3.4 (later versions have a different API)
61 v0.0.6 - Tell MIRA to use /tmp for temporary files 61 v0.0.6 - Tell MIRA to use /tmp for temporary files
62 - Tell MIRA to ignore long read names (otherwise it aborts) 62 - Tell MIRA to ignore long read names (otherwise it aborts)
63 v0.0.7 - Automated installation of the 64 bit Linux MIRA binary. 63 v0.0.7 - Automated installation of the 64 bit Linux MIRA binary.
64 v0.0.8 - Basic unit test aded.
64 65
65 66
66 Developers 67 Developers
67 ========== 68 ==========
68 69
70 http://bitbucket.org/peterjc/galaxy-central/src/tools 71 http://bitbucket.org/peterjc/galaxy-central/src/tools
71 72
72 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use 73 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use
73 the following command from the Galaxy root folder: 74 the following command from the Galaxy root folder:
74 75
75 $ tar -czf mira_wrapper.tar.gz tools/mira_3_4/mira.* tools/mira_3_4/tool_dependencies.xml 76 $ tar -czf mira_wrapper.tar.gz tools/mira_3_4/mira.* tools/mira_3_4/tool_dependencies.xml test-data/tvc_mini.fastq test-data/tvc_contigs.fasta
76 77
77 Check this worked: 78 Check this worked:
78 79
79 $ tar -tzf mira_wrapper.tar.gz 80 $ tar -tzf mira_wrapper.tar.gz
80 tools/mira_3_4/mira.py 81 tools/mira_3_4/mira.py
81 tools/mira_3_4/mira.txt 82 tools/mira_3_4/mira.txt
82 tools/mira_3_4/mira.xml 83 tools/mira_3_4/mira.xml
83 tools/mira_3_4/tool_dependencies.xml 84 tools/mira_3_4/tool_dependencies.xml
85 test-data/tvc_mini.fastq
86 test-data/tvc_contigs.fasta
84 87
85 88
86 Licence (MIT/BSD style) 89 Licence (MIT/BSD style)
87 ======================= 90 =======================
88 91