Mercurial > repos > peterjc > mira_assembler

comparison tools/mira_3_4/README.rst @ 11:e0490bd31ce2 draft

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Uploaded v0.0.8 take 5, development moved to GitHub
author peterjc
date Tue, 17 Sep 2013 11:51:37 -0400
parents b1d60b46d282
children
comparison
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10:84cb67beb1ea 11:e0490bd31ce2
70 v0.0.8 - Basic unit test added (but commented out due to Galaxy issue). 70 v0.0.8 - Basic unit test added (but commented out due to Galaxy issue).
71 - Link to Tool Shed added to help text and this documentation. 71 - Link to Tool Shed added to help text and this documentation.
72 - Use reStructuredText for this README file. 72 - Use reStructuredText for this README file.
73 - Adopted standard MIT licence. 73 - Adopted standard MIT licence.
74 - Updated citation information (Cock et al. 2013). 74 - Updated citation information (Cock et al. 2013).
75 - Development moved to GitHub, https://github.com/peterjc/pico_galaxy
75 ======= ====================================================================== 76 ======= ======================================================================
76 77
77 78
78 Developers 79 Developers
79 ========== 80 ==========
80 81
81 This script and related tools are being developed on the following hg branch: 82 This script and related tools were initially developed on the following hg branch:
82 http://bitbucket.org/peterjc/galaxy-central/src/tools 83 http://bitbucket.org/peterjc/galaxy-central/src/tools
84
85 Development has now moved to a dedicated GitHub repository:
86 https://github.com/peterjc/pico_galaxy/tree/master/tools/mira_3_4
83 87
84 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use 88 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use
85 the following command from the Galaxy root folder:: 89 the following command from the Galaxy root folder::
86 90
87 $ tar -czf mira_wrapper.tar.gz tools/mira_3_4/README.rst tools/mira_3_4/mira.xml tools/mira_3_4/mira.py tools/mira_3_4/tool_dependencies.xml test-data/tvc_mini.fastq test-data/tvc_contigs.fasta 91 $ tar -czf mira_wrapper.tar.gz tools/mira_3_4/README.rst tools/mira_3_4/mira.xml tools/mira_3_4/mira.py tools/mira_3_4/tool_dependencies.xml test-data/tvc_mini.fastq test-data/tvc_contigs.fasta
88 92
89 Check this worked: 93 Check this worked::
90 94
91 $ tar -tzf mira_wrapper.tar.gz 95 $ tar -tzf mira_wrapper.tar.gz
92 tools/mira_3_4/README.rst 96 tools/mira_3_4/README.rst
93 tools/mira_3_4/mira.xml 97 tools/mira_3_4/mira.xml
94 tools/mira_3_4/mira.py 98 tools/mira_3_4/mira.py