Mercurial > repos > peterjc > mira_assembler

comparison tools/mira_3_4/mira.txt @ 8:da604cc07658 draft

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Uploaded v0.0.8 take 2, adds links to Tool Shed.
author peterjc
date Thu, 02 May 2013 12:40:04 -0400
parents e810e45bdad7
children
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7:e810e45bdad7 8:da604cc07658
6 See the licence text below. 6 See the licence text below.
7 7
8 This tool is a short Python script (to collect the MIRA output and move it 8 This tool is a short Python script (to collect the MIRA output and move it
9 to where Galaxy expects the files, and convert MIRA's TCS file into a tab 9 to where Galaxy expects the files, and convert MIRA's TCS file into a tab
10 separated file for use in Galaxy). 10 separated file for use in Galaxy).
11
12 It is available from the Galaxy Tool Shed at:
13 http://toolshed.g2.bx.psu.edu/view/peterjc/mira_assembler
11 14
12 15
13 Automated Installation 16 Automated Installation
14 ====================== 17 ======================
15 18
59 version and the MIRA version being used. 62 version and the MIRA version being used.
60 - Check using MIRA 3.4 (later versions have a different API) 63 - Check using MIRA 3.4 (later versions have a different API)
61 v0.0.6 - Tell MIRA to use /tmp for temporary files 64 v0.0.6 - Tell MIRA to use /tmp for temporary files
62 - Tell MIRA to ignore long read names (otherwise it aborts) 65 - Tell MIRA to ignore long read names (otherwise it aborts)
63 v0.0.7 - Automated installation of the 64 bit Linux MIRA binary. 66 v0.0.7 - Automated installation of the 64 bit Linux MIRA binary.
64 v0.0.8 - Basic unit test aded. 67 v0.0.8 - Basic unit test added.
68 - Link to Tool Shed added to help text and this documentation.
65 69
66 70
67 Developers 71 Developers
68 ========== 72 ==========
69 73