Mercurial > repos > peterjc > mira_assembler

comparison tools/mira3/README.rst @ 19:b6397643dbb6 draft

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planemo upload for repository https://github.com/peterjc/galaxy_mira/tree/master/tools/mira3/ commit 4fbb738ddbc87132ca11dfaaaa38aa922ac87115-dirty
author peterjc
date Fri, 11 Sep 2015 11:43:09 -0400
parents 082d6adb57a5
children e7f27b64b402
comparison
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18:082d6adb57a5 19:b6397643dbb6
92 ========== 92 ==========
93 93
94 This script and related tools were initially developed on the following hg branch: 94 This script and related tools were initially developed on the following hg branch:
95 http://bitbucket.org/peterjc/galaxy-central/src/tools 95 http://bitbucket.org/peterjc/galaxy-central/src/tools
96 96
97 Development has now moved to a dedicated GitHub repository: 97 For some time developement continued at https://github.com/peterjc/pico_galaxy but
98 https://github.com/peterjc/pico_galaxy/tree/master/tools/mira_3_4 98 is now in a dedicated GitHub repository: https://github.com/peterjc/galaxy_mira
99 99
100 For pushing a release to the test or main "Galaxy Tool Shed", use the following 100 For pushing a release to the test or main "Galaxy Tool Shed", use the following
101 Planemo commands (which requires you have set your Tool Shed access details in 101 Planemo commands (which requires you have set your Tool Shed access details in
102 ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: 102 ``~/.planemo.yml`` and that you have access rights on the Tool Shed)::
103 103
104 $ planemo shed_update --shed_target testtoolshed --check_diff ~/repositories/pico_galaxy/tools/mira3/ 104 $ planemo shed_update -t testtoolshed --check_diff tools/mira3/
105 ... 105 ...
106 106
107 or:: 107 or::
108 108
109 $ planemo shed_update --shed_target toolshed --check_diff ~/repositories/pico_galaxy/tools/mira3/ 109 $ planemo shed_update -t toolshed --check_diff tools/mira3/
110 ... 110 ...
111 111
112 To just build and check the tar ball, use:: 112 To just build and check the tar ball, use::
113 113
114 $ planemo shed_upload --tar_only ~/repositories/pico_galaxy/tools/mira3/ 114 $ planemo shed_upload --tar_only tools/mira3/
115 ... 115 ...
116 $ tar -tzf shed_upload.tar.gz 116 $ tar -tzf shed_upload.tar.gz
117 test-data/empty_file.dat 117 test-data/empty_file.dat
118 test-data/tvc_contigs.fasta 118 test-data/tvc_contigs.fasta
119 test-data/tvc_mini.fastq 119 test-data/tvc_mini.fastq