Mercurial > repos > peterjc > mira_assembler

comparison tools/mira3/README.rst @ 13:8a05c6b852c3 draft

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Uploaded v0.0.10, adding test
author peterjc
date Mon, 03 Mar 2014 12:54:11 -0500
parents 5b0af75dfe5a
children 880551558151
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12:5b0af75dfe5a 13:8a05c6b852c3
24 Manual Installation 24 Manual Installation
25 =================== 25 ===================
26 26
27 There are just two Galaxy files to install: 27 There are just two Galaxy files to install:
28 28
29 * mira.py (the Python script) 29 * ``mira.py`` (the Python script)
30 * mira.xml (the Galaxy tool definition) 30 * ``mira.xml`` (the Galaxy tool definition)
31 31
32 The suggested location is a new tools/mira3 folder. You will also need to 32 The suggested location is a new ``tools/mira3`` folder. You will also need to
33 modify the tools_conf.xml file to tell Galaxy to offer the tool, and also do 33 modify the ``tools_conf.xml`` file to tell Galaxy to offer the tool, and also do
34 this to tools_conf.xml.sample in order to run any tests:: 34 this to ``tools_conf.xml.sample`` in order to run any tests::
35 35
36 <tool file="mira3/mira.xml" /> 36 <tool file="mira3/mira.xml" />
37 37
38 You will also need to install MIRA, we used version 3.4.1.1. See: 38 You will also need to install MIRA, we used version 3.4.1.1. See:
39 39
72 - Use reStructuredText for this README file. 72 - Use reStructuredText for this README file.
73 - Adopted standard MIT licence. 73 - Adopted standard MIT licence.
74 - Updated citation information (Cock et al. 2013). 74 - Updated citation information (Cock et al. 2013).
75 - Development moved to GitHub, https://github.com/peterjc/pico_galaxy 75 - Development moved to GitHub, https://github.com/peterjc/pico_galaxy
76 v0.0.9 - Renamed folder mira_assembler to mira3 (see also MIRA 4 wrapper). 76 v0.0.9 - Renamed folder mira_assembler to mira3 (see also MIRA 4 wrapper).
77 - Correct path issue in automated dependency installation 77 - Correct path issue in automated dependency installation.
78 v0.0.10 - Added a functional test.
78 ======= ====================================================================== 79 ======= ======================================================================
79 80
80 81
81 Developers 82 Developers
82 ========== 83 ==========